Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq248169 158 2e-33 seq192473 143 5e-29 seq155070 114 2e-20 seq22071 87.8 3e-12 seq164438 86.0 1e-11 seq82011 84.2 4e-11 >seq248169 Length=378 Score = 158 bits (174), Expect = 2e-33 Identities = 181/237 (76%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT-CGCGCTGGGCCA 244376 || |||||||||||| || ||||| |||||| |||||| || | | | |||| ||| Sbjct 271 CACCCCCTTGCTGACCGGAGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGG-CCA 213 Query 244377 GCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGT 244436 ||| |||||| | || ||||| ||||||| |||||||| ||||| || ||| | | Sbjct 212 GCTCACAGCTGGCCTCCAGGGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGA-GC 154 Query 244437 CGC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCC 244495 || |||||| | ||| |||||||| | ||||| |||||| |||||||||| ||| Sbjct 153 AGCTGGGCCTGGGCGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCGGCCAGGCCC 94 Query 244496 TGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG-CTTCGGGCAC 244551 |||||||||||||||||||| | ||| ||| |||||||||| || || |||| || Sbjct 93 TGCACGCCGATGCCGATGGGGCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGGGGAC 37 >seq192473 Length=894 Score = 143 bits (158), Expect = 5e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||||||| | ||||||||| || ||||||||||| ||||| ||||||||||||| Sbjct 434 CCACCTCCTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 493 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| |||||||| |||||||||||||||| |||| Sbjct 494 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 553 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 || ||||| ||||| ||| || | || |||||| | | ||||| ||| || Sbjct 554 TGCCAGTCTCAGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 613 Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTAGC 244910 |||| | ||||| |||||||| Sbjct 614 TGCGCACGCGGCCCTGCCGCTCGTAGC 640 >seq155070 Length=997 Score = 114 bits (126), Expect = 2e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || |||| ||||||||| || ||||||||||| || ||| |||||||||| | |||| Sbjct 645 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTGC 586 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| |||| |||| || ||||||| ||| | |||||| ||| Sbjct 585 TCTTCCTTCCCTGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 526 Query 245123 TCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 |||| ||||| || | || || |||| || Sbjct 525 TCCAAGTAGATGGCAAAAGCCCCAGGCCTCT 495 >seq22071 Length=8576 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 8284 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 8343 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||| | || ||||| || ||||| Sbjct 8344 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTT 8403 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 8404 ATTAGCAGAGATGAGG 8419 >seq164438 Length=463 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933 || ||| ||||||||||||||||||| ||||| | | | ||||| ||||| | | || Sbjct 113 GATGTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCTGCCATCTTCAGGAT 172 Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCC 243993 | ||||| || ||||| || | |||||||||| |||| |||| ||||||| | | Sbjct 173 GGTTTTCTGGGAGATCTCCCACACGGTCTTGTAGAGCTGCTTCAGGTCATCGGGGATCTC 232 Query 243994 TTCGATGTTCTG 244005 ||||||||| Sbjct 233 AGGGATGTTCTG 244 >seq82011 Length=15829 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | ||||| || || |||||||| || ||| | || || || || || ||| Sbjct 12736 GTAGCCTTTGCAGCCGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCAATTTTTTGG 12677 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || ||| | | | | ||||| |||||||| || || || ||||||||||| || || Sbjct 12676 CTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTCATCAGTAGAGAT 12617 Query 42828 GAGG 42831 |||| Sbjct 12616 GAGG 12613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 940697828044800