Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq248169 158 2e-33
seq192473 143 5e-29
seq155070 114 2e-20
seq22071 87.8 3e-12
seq164438 86.0 1e-11
seq82011 84.2 4e-11
>seq248169
Length=378
Score = 158 bits (174), Expect = 2e-33
Identities = 181/237 (76%), Gaps = 5/237 (2%)
Strand=Plus/Minus
Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT-CGCGCTGGGCCA 244376
|| |||||||||||| || ||||| |||||| |||||| || | | | |||| |||
Sbjct 271 CACCCCCTTGCTGACCGGAGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGG-CCA 213
Query 244377 GCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGT 244436
||| |||||| | || ||||| ||||||| |||||||| ||||| || ||| | |
Sbjct 212 GCTCACAGCTGGCCTCCAGGGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGA-GC 154
Query 244437 CGC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCC 244495
|| |||||| | ||| |||||||| | ||||| |||||| |||||||||| |||
Sbjct 153 AGCTGGGCCTGGGCGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCGGCCAGGCCC 94
Query 244496 TGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG-CTTCGGGCAC 244551
|||||||||||||||||||| | ||| ||| |||||||||| || || |||| ||
Sbjct 93 TGCACGCCGATGCCGATGGGGCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGGGGAC 37
>seq192473
Length=894
Score = 143 bits (158), Expect = 5e-29
Identities = 156/207 (75%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763
||||||||||| | ||||||||| || ||||||||||| ||||| |||||||||||||
Sbjct 434 CCACCTCCTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 493
Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823
||||||||| ||| || ||| ||| |||||||| |||||||||||||||| ||||
Sbjct 494 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 553
Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883
|| ||||| ||||| ||| || | || |||||| | | ||||| ||| ||
Sbjct 554 TGCCAGTCTCAGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 613
Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTAGC 244910
|||| | ||||| ||||||||
Sbjct 614 TGCGCACGCGGCCCTGCCGCTCGTAGC 640
>seq155070
Length=997
Score = 114 bits (126), Expect = 2e-20
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062
|| |||| ||||||||| || ||||||||||| || ||| |||||||||| | ||||
Sbjct 645 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTGC 586
Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122
|| ||| || ||||||||| |||| |||| || ||||||| ||| | |||||| |||
Sbjct 585 TCTTCCTTCCCTGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 526
Query 245123 TCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153
|||| ||||| || | || || |||| ||
Sbjct 525 TCCAAGTAGATGGCAAAAGCCCCAGGCCTCT 495
>seq22071
Length=8576
Score = 87.8 bits (96), Expect = 3e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755
|| ||||| |||| |||||| | || || || ||||||||||| ||||| |||| ||
Sbjct 8284 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 8343
Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815
| || || ||||| ||| ||| || |||||| ||| | || ||||| || |||||
Sbjct 8344 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTT 8403
Query 42816 ATCAGCAGGGACGAGG 42831
|| ||||| || ||||
Sbjct 8404 ATTAGCAGAGATGAGG 8419
>seq164438
Length=463
Score = 86.0 bits (94), Expect = 1e-11
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933
|| ||| ||||||||||||||||||| ||||| | | | ||||| ||||| | | ||
Sbjct 113 GATGTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCTGCCATCTTCAGGAT 172
Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCC 243993
| ||||| || ||||| || | |||||||||| |||| |||| ||||||| | |
Sbjct 173 GGTTTTCTGGGAGATCTCCCACACGGTCTTGTAGAGCTGCTTCAGGTCATCGGGGATCTC 232
Query 243994 TTCGATGTTCTG 244005
|||||||||
Sbjct 233 AGGGATGTTCTG 244
>seq82011
Length=15829
Score = 84.2 bits (92), Expect = 4e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767
||||||||| | ||||| || || |||||||| || ||| | || || || || || |||
Sbjct 12736 GTAGCCTTTGCAGCCGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCAATTTTTTGG 12677
Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827
|| ||| | | | | ||||| |||||||| || || || ||||||||||| || ||
Sbjct 12676 CTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTCATCAGTAGAGAT 12617
Query 42828 GAGG 42831
||||
Sbjct 12616 GAGG 12613
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 940697828044800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |