Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq43590 181 2e-40
seq304265 118 2e-21
>seq43590
Length=10808
Score = 181 bits (200), Expect = 2e-40
Identities = 220/300 (73%), Gaps = 0/300 (0%)
Strand=Plus/Minus
Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939
|||| || | || ||||| ||||| || ||| || ||||| ||| | || || |
Sbjct 5624 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 5565
Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999
| || |||||||| || || || | || |||||||||||||| ||||||||| | ||||
Sbjct 5564 TGTTGACGATGTCGAAGCCAACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 5505
Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059
|||||||| |||| |||| ||||| |||| ||| ||||| || |||| ||| | |||
Sbjct 5504 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGCGCACCCATCTCCACCATGG 5445
Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119
|||| ||||||||||| ||||| || || || || || | | ||| | ||| || || |
Sbjct 5444 TCTCGCCGAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 5385
Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179
|| |||| ||| || || || | |||| ||| || || ||||| || || ||| |||
Sbjct 5384 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTGCAA 5325
Score = 152 bits (168), Expect = 7e-32
Identities = 179/242 (74%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786
|| || || ||||| || || | |||||||||| |||| || ||||| | ||| |||||
Sbjct 3701 ATGAGCCGGGTGGTCTGGAAGAGCTGCTCGTCATCCCAGTCGGGGTGCTGGTGCTTGAGC 3642
Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846
|| |||||||| | |||||| || | |||||| || |||||||||||||| | ||||||
Sbjct 3641 ACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATCAGCCCCGGC 3582
Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906
|| | || ||||| || | |||||| | || |||| | |||||||| | |||||
Sbjct 3581 ACCAGGCCGAACACCTCCTGCCCCACGGAGAACTGCAGGTGCTCGGGCACGTGGGGCGGG 3522
Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966
|||||||| | |||| || || || || || || |||||||| || || || | |
Sbjct 3521 TACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGCGGGTACATTTCTCCATCGATCATC 3462
Query 9967 TG 9968
||
Sbjct 3461 TG 3460
Score = 138 bits (152), Expect = 2e-27
Identities = 175/239 (73%), Gaps = 4/239 (2%)
Strand=Plus/Minus
Query 9453 GAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACGAA 9512
||| |||| || | |||| | |||||||| | | |||||| |||||||| | |||
Sbjct 4869 GAAAGATTTGACCATATGGGAGAGTCCGTGCTCCAGCATGATGGAGTTGTTGTAGAGGAA 4810
Query 9513 GTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACAGAGAATGCCA 9572
|| | | | |||| | |||| ||| | || |||||||| ||| | |||||
Sbjct 4809 CTGCTGGAAGGTGTACTCCTGGTCGTGGATGTGGAAGGTATCAGGCAGCAGTGGGTGCCA 4750
Query 9573 GCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGGTACCG 9630
| |||| ||||| ||||||||||| || || ||||||||||||||||| ||| |
Sbjct 4749 GTGGTACAGGGTGTTGAACTCGGCTGCGATGCGGTTCTGGTACTGAAACCTCTGGT--TG 4692
Query 9631 AACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATA 9689
||||| | ||| |||||||| | |||| ||||||||||||||| || ||||| |||||
Sbjct 4691 AACAGCAGCTCGGGGTCAAACTTCAGCTTGAAGTGGTACCCGCTCAGGTGCTGCACATA 4633
>seq304265
Length=2654
Score = 118 bits (130), Expect = 2e-21
Identities = 203/294 (69%), Gaps = 2/294 (1%)
Strand=Plus/Plus
Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939
||||||| | |||| || |||||||||| || | ||| || | || ||| |
Sbjct 557 GGAACGCTACGTACGGGCACTTCTTCACATTGAGGCACACGAGCTTCTCCAGGGATGCTG 616
Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999
| || || || || || || | | || || ||||| ||||||||||||||| | ||||
Sbjct 617 TCTTAACAATCTCAAAGCCAGCTGCTCCACCAAAGGTACTGGGTTTCCAGTACTCTGGGG 676
Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059
|||||||| ||| | | ||||| |||| |||||| ||||| || | ||| | || |
Sbjct 677 AGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATAC 736
Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119
| || || || ||| || ||| | ||||| |||| | ||||| | ||| | || |
Sbjct 737 TTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCGAGCAGTAAGCCTGGGTAAAACTCCA 796
Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGC--TATCTCCTTCTC 9171
||| || | ||| ||||| | |||||| ||| || || | ||| ||||||
Sbjct 797 GAGCATCAATGTCTCCATACAACTCTTCCAGCTCTGCTGCCTTCTCTTCTTCTC 850
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 720937304832000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |