Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq43590 181 2e-40 seq304265 118 2e-21 >seq43590 Length=10808 Score = 181 bits (200), Expect = 2e-40 Identities = 220/300 (73%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| ||||| || ||| || ||||| ||| | || || | Sbjct 5624 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 5565 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || |||||||| || || || | || |||||||||||||| ||||||||| | |||| Sbjct 5564 TGTTGACGATGTCGAAGCCAACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 5505 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| |||| |||| ||||| |||| ||| ||||| || |||| ||| | ||| Sbjct 5504 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGCGCACCCATCTCCACCATGG 5445 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 |||| ||||||||||| ||||| || || || || || | | ||| | ||| || || | Sbjct 5444 TCTCGCCGAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 5385 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACAA 9179 || |||| ||| || || || | |||| ||| || || ||||| || || ||| ||| Sbjct 5384 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTGCAA 5325 Score = 152 bits (168), Expect = 7e-32 Identities = 179/242 (74%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || || ||||| || || | |||||||||| |||| || ||||| | ||| ||||| Sbjct 3701 ATGAGCCGGGTGGTCTGGAAGAGCTGCTCGTCATCCCAGTCGGGGTGCTGGTGCTTGAGC 3642 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 || |||||||| | |||||| || | |||||| || |||||||||||||| | |||||| Sbjct 3641 ACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATCAGCCCCGGC 3582 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || | || ||||| || | |||||| | || |||| | |||||||| | ||||| Sbjct 3581 ACCAGGCCGAACACCTCCTGCCCCACGGAGAACTGCAGGTGCTCGGGCACGTGGGGCGGG 3522 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 |||||||| | |||| || || || || || || |||||||| || || || | | Sbjct 3521 TACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGCGGGTACATTTCTCCATCGATCATC 3462 Query 9967 TG 9968 || Sbjct 3461 TG 3460 Score = 138 bits (152), Expect = 2e-27 Identities = 175/239 (73%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 9453 GAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACGAA 9512 ||| |||| || | |||| | |||||||| | | |||||| |||||||| | ||| Sbjct 4869 GAAAGATTTGACCATATGGGAGAGTCCGTGCTCCAGCATGATGGAGTTGTTGTAGAGGAA 4810 Query 9513 GTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACAGAGAATGCCA 9572 || | | | |||| | |||| ||| | || |||||||| ||| | ||||| Sbjct 4809 CTGCTGGAAGGTGTACTCCTGGTCGTGGATGTGGAAGGTATCAGGCAGCAGTGGGTGCCA 4750 Query 9573 GCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAA--GGCGGTACCG 9630 | |||| ||||| ||||||||||| || || ||||||||||||||||| ||| | Sbjct 4749 GTGGTACAGGGTGTTGAACTCGGCTGCGATGCGGTTCTGGTACTGAAACCTCTGGT--TG 4692 Query 9631 AACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATA 9689 ||||| | ||| |||||||| | |||| ||||||||||||||| || ||||| ||||| Sbjct 4691 AACAGCAGCTCGGGGTCAAACTTCAGCTTGAAGTGGTACCCGCTCAGGTGCTGCACATA 4633 >seq304265 Length=2654 Score = 118 bits (130), Expect = 2e-21 Identities = 203/294 (69%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 ||||||| | |||| || |||||||||| || | ||| || | || ||| | Sbjct 557 GGAACGCTACGTACGGGCACTTCTTCACATTGAGGCACACGAGCTTCTCCAGGGATGCTG 616 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || || || || || || | | || || ||||| ||||||||||||||| | |||| Sbjct 617 TCTTAACAATCTCAAAGCCAGCTGCTCCACCAAAGGTACTGGGTTTCCAGTACTCTGGGG 676 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| ||| | | ||||| |||| |||||| ||||| || | ||| | || | Sbjct 677 AGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATAC 736 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || || || ||| || ||| | ||||| |||| | ||||| | ||| | || | Sbjct 737 TTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCGAGCAGTAAGCCTGGGTAAAACTCCA 796 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGC--TATCTCCTTCTC 9171 ||| || | ||| ||||| | |||||| ||| || || | ||| |||||| Sbjct 797 GAGCATCAATGTCTCCATACAACTCTTCCAGCTCTGCTGCCTTCTCTTCTTCTC 850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720937304832000