Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq59012 86.0 2e-11 seq181449 84.2 9e-11 >seq59012 Length=3606 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| |||||||| | ||||| || || ||||||||||| | || || || ||||| Sbjct 2572 GTTACCAATGCAGTAGTGACTGTCCCAGCCTATTTCAATGACTCCCAGCGCCAGGCAACA 2631 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| ||| || || | || || || |||| || || || || |||||| Sbjct 2632 AAAGATGCTGGAACTATCGCAGGGCTCAACGTCCTGAGAATCATCAACGAGCCCACAGCA 2691 Query 451433 GCTGC 451437 ||||| Sbjct 2692 GCTGC 2696 >seq181449 Length=4937 Score = 84.2 bits (92), Expect = 9e-11 Identities = 83/107 (78%), Gaps = 3/107 (3%) Strand=Plus/Minus Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAA---ACTAAAACTTTTGCTCCT 451246 |||| |||||| ||||||| || || | ||||| | || ||||| ||||||||| Sbjct 3214 AAAGCCAAGCCCCATATTCAGGTCGATGTTGGAGGTGGACAGACAAAAACGTTTGCTCCT 3155 Query 451247 GAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGA 451293 ||||||||||| | ||||| || || || ||||| ||||||||||| Sbjct 3154 GAAGAAATTTCTGCAATGGTCCTGACAAAGATGAAGGAAACAGCAGA 3108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1967909570595840