Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq121263 262 5e-65 seq59012 149 8e-31 >seq121263 Length=54079 Score = 262 bits (290), Expect = 5e-65 Identities = 1025/1597 (64%), Gaps = 32/1597 (2%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| ||||| || || ||||| ||||| || ||||| || || Sbjct 38112 TTCATCCTCTGCTTTGTACTTCTCTGCTTCTTGCACCATACGGTCGATGTCGTCCTTGCT 38171 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 | | ||||| ||||| || || || ||||| | ||||||| | ||| || | Sbjct 38172 GAGGCGACCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCAC 38231 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || || || |||| |||||||| ||||| | || || | || | || || || Sbjct 38232 GGCGCTGACGTTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGAC 38291 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||||| ||||| | || || || |||| ||||| | || || | |||||||| | Sbjct 38292 TCCCCTGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAGGTTGTTATCCCT 38351 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGTG 6866 | | | | ||||||||||| || | | || || | | || || ||| Sbjct 38352 TGTCATAGCCCTCTCACCTTCATACACCTGGACGAGGAC-GCTGCTCTGGTTGTCTGAGT 38410 Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926 || | |||| | || || || | || || || || || | | || | | | Sbjct 38411 AGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGGATGGTGGTGTTGCGCTTGATGAGAGCAG 38470 Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986 |||| | || || || || | || || |||||||| || || ||||| || | || Sbjct 38471 TCATCACCCCTCCAGCCGTCTCAATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGCA 38530 Query 6987 GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGT 7046 | || || || || | || ||| | | ||| || ||||| || | || |||| Sbjct 38531 GATCCTGCACGTTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGTACGGCAGCGCCGT 38590 Query 7047 ATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCG 7106 | || || |||||||||||||| || | || || || ||||| || || || ||||| Sbjct 38591 AAGCCACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAATCCT 38650 Query 7107 ATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA 7166 | || | || || || ||||| || || || ||||| |||| ||||| || | | Sbjct 38651 GGAGCAGCTTCTGGATCTTGGGGATCCGGGTAGAGCCACCCACCAGCACGATCTCCTGGA 38710 Query 7167 CTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTAC 7226 | || |||| ||| | ||| || || | || || || || |||| || Sbjct 38711 TCTGGCCCTTGTCGAGCTTGGCGTCACGCAGAGCCTTCTCCACCGGCTCCAGGGTGCCAC 38770 Query 7227 GGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAA 7286 |||| | ||| | || ||||| ||||| ||||| |||||||| || ||||| |||| Sbjct 38771 GGAAGAGGTCAGCATTGAGCTCCTCGAAACGGGCACGAGTAATGGAAGTGTAGAAGTCAA 38830 Query 7287 CGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT---AACGTTC 7343 ||| || | | || ||||| |||||| | | || ||| || || | || | Sbjct 38831 TGCCCTCAAAGAGAGAGTCAATCTCAATGCTGGCCTG---CGTGGAGGAGCTGAGGGTGC 38887 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATAT 7403 |||| || | |||||| || || || | || | | || ||| ||| || | || | Sbjct 38888 GCTTGGCCCTCTCACAAGCTGTGCGCAGCCGCCTCACCGCTCGCTTGTTGCCAGCGATGT 38947 Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463 | ||| || || || || || ||||| ||||| | | | || || | Sbjct 38948 CACGCTTGTGCTTGCGCTTGAATTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAAAGT 39007 Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523 | || |||||||| || || || || || || | || || ||||| || || |||| | Sbjct 39008 CCTCCCCACCCAAATGGGTGTCACCAGCTGTGGACTTTACCTCAAAAATCCCATCTTCGA 39067 Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583 || | | | || ||||| || || || || ||||||||||| ||||| || ||| | | Sbjct 39068 TGGTAAGGATGGAGACATCGAAAGTGCCCCCTCCCAGGTCAAAGATGAGCACATTCTTCT 39127 Query 7584 CGTCGTC------TTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637 | || | | ||||| || || || || || ||||| || || || || |||| Sbjct 39128 CTCCGGCCCGGGTTCCTTTCTTGTCCAGGCCATAAGCAATAGCGGCTGCAGTGGGCTCAT 39187 Query 7638 TAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 | || ||||| | ||| || ||||||| ||||| | |||||||| || || || || Sbjct 39188 TGATGATACGCATCACA-TTGAGGCCAGTGATAGTGCCGGCATCTTTGGTGGCCTGGCGC 39246 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || || || || ||||| || || || || | ||| || | | || || || ||| Sbjct 39247 TGGGAGTCATTGAAGTACGCTGGCACAGTGATGACAGCATTCTGCACCTTGCACCCTAGA 39306 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || | || || || || ||||| ||||| || ||||| || ||||| || | | | Sbjct 39307 TAGGCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCTG-GGAA 39365 Query 7817 AACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 | || ||| | || || || | || || | | | |||| || || |||| Sbjct 39366 GAAGGTCTTCATCTCCCCCTTGTACTCCACCTGCACCTTGGGCTT----GC--CACCCTC 39419 Query 7876 GATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932 | ||| | | | ||||| ||||| || || ||| |||| | |||| Sbjct 39420 ATTCACCACACGGAAAGGCCAATGCTTCATGTCCGACTGCACCGTGGGGTCGTCATACTT 39479 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | || || || ||||| ||||| || | ||||| |||||||||| ||| ||||| Sbjct 39480 GCGGCCTATGAGGCGCTTGGCATCGAAGATGGTGTTGGTGGGGTTCATTGCTACCTGGTT 39539 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-G 8051 ||| || || |||||||| || || || || || || || || || || | |||| | Sbjct 39540 CTTGGCAGCATCCCCGATGAGCCGCTCTGTA---TCAGTGAAGGCCACATA-GCTGGGTG 39595 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111 | || || || || |||||||| || || || || || | ||| || |||| || | Sbjct 39596 TGGTGCGGTTACCCTGGTCGTTGGCGATGATCTCCACCTTGCCGTGCTGGAAGACACCCA 39655 Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 |||| || ||||| || || | || || ||||| || Sbjct 39656 CGCAGGAGTACGTGGTGCCCAGGTCGATGCCGATCGC 39692 >seq59012 Length=3606 Score = 149 bits (164), Expect = 8e-31 Identities = 357/540 (66%), Gaps = 0/540 (0%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 ||||| || || || |||||||||||||| || | || || || ||||| ||||| || Sbjct 3364 GCCCCATACGCCACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCGTTGAAG 3305 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || | || || || ||||| || || || || || |||| ||||| Sbjct 3304 AAGTCCTGCAGCAGCTTCTGGATCTTGGGGATGCGCGTGGAGCCTCCCACCAGCACGATG 3245 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | | || || || | ||| | ||| | || | || || || || |||| Sbjct 3244 TCGTGGATCTGAGACTTGTCCAGCTTGGCGTCCCTCAGCGCCTTCTCCACGGGGTCCAGG 3185 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| || ||||| || || || | ||| ||||| || ||| Sbjct 3184 GTGCCACGGAACAGGTCGGCGTTGAGCTCCTCGAAGCGAGCCCTGGTGATGGAGGTGTAG 3125 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || || | ||| ||||| | || || || || ||| | | || | | || || | | Sbjct 3124 AAGTCGATGCCCTCGTAGAGGGAGTCGATCTCGATGCTGGCCTGGGTGGAGGAGGACAGC 3065 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| |||||||| || || || || | || || | ||| ||| ||| || Sbjct 3064 GTGCGCTTGGCGCGCTCGCAGGCGGTGCGCAGGCGGCGCACGGCGCGCTTGTTCTCGCTG 3005 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| || || || || ||||| | |||||| | | | ||| Sbjct 3004 ATGTCCTTCTTGTGCTTGCGCTTGAACTCGGCGATGAAGTGGTTCACCATGCGGTTGTCG 2945 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || || |||||||| || |||||||| || | ||| || || ||||| || || Sbjct 2944 AAGTCCTCCCCGCCCAAGTGGGTGTCCCCCGCCGTGGATTTCACCTCGAAGATGCCGTCT 2885 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 || ||| | | | || || || || || || || |||||||| || ||||| |||||| Sbjct 2884 TCGATGGTCAGGATGGACACGTCGAAGGTGCCGCCGCCCAGGTCGAAGATGAGCACGTTC 2825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632683727923200