Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq121263 262 5e-65
seq59012 149 8e-31
>seq121263
Length=54079
Score = 262 bits (290), Expect = 5e-65
Identities = 1025/1597 (64%), Gaps = 32/1597 (2%)
Strand=Plus/Plus
Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627
|||||| || |||| ||||| || || ||||| ||||| || ||||| || ||
Sbjct 38112 TTCATCCTCTGCTTTGTACTTCTCTGCTTCTTGCACCATACGGTCGATGTCGTCCTTGCT 38171
Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687
| | ||||| ||||| || || || ||||| | ||||||| | ||| || |
Sbjct 38172 GAGGCGACCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCAC 38231
Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747
|| || || |||| |||||||| ||||| | || || | || | || || ||
Sbjct 38232 GGCGCTGACGTTCAGGATACCATTGGCATCGATGTCAAAAGTGACCTCGATCTGGGGGAC 38291
Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807
||||| ||||| | || || || |||| ||||| | || || | |||||||| |
Sbjct 38292 TCCCCTGGGTGCTGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAGGTTGTTATCCCT 38351
Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT-TGATTATCTTGTG 6866
| | | | ||||||||||| || | | || || | | || || |||
Sbjct 38352 TGTCATAGCCCTCTCACCTTCATACACCTGGACGAGGAC-GCTGCTCTGGTTGTCTGAGT 38410
Query 6867 CCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGG 6926
|| | |||| | || || || | || || || || || | | || | | |
Sbjct 38411 AGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGGATGGTGGTGTTGCGCTTGATGAGAGCAG 38470
Query 6927 TCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACA 6986
|||| | || || || || | || || |||||||| || || ||||| || | ||
Sbjct 38471 TCATCACCCCTCCAGCCGTCTCAATGCCCAGGGACAGAGGGGTGACATCCAACAGCAGCA 38530
Query 6987 GGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGT 7046
| || || || || | || ||| | | ||| || ||||| || | || ||||
Sbjct 38531 GATCCTGCACGTTCTCAGACTTGTCTCCCATGAGGATAGCTGCTTGTACGGCAGCGCCGT 38590
Query 7047 ATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCG 7106
| || || |||||||||||||| || | || || || ||||| || || || |||||
Sbjct 38591 AAGCCACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAATCCT 38650
Query 7107 ATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCA 7166
| || | || || || ||||| || || || ||||| |||| ||||| || | |
Sbjct 38651 GGAGCAGCTTCTGGATCTTGGGGATCCGGGTAGAGCCACCCACCAGCACGATCTCCTGGA 38710
Query 7167 CTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTAC 7226
| || |||| ||| | ||| || || | || || || || |||| ||
Sbjct 38711 TCTGGCCCTTGTCGAGCTTGGCGTCACGCAGAGCCTTCTCCACCGGCTCCAGGGTGCCAC 38770
Query 7227 GGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAA 7286
|||| | ||| | || ||||| ||||| ||||| |||||||| || ||||| ||||
Sbjct 38771 GGAAGAGGTCAGCATTGAGCTCCTCGAAACGGGCACGAGTAATGGAAGTGTAGAAGTCAA 38830
Query 7287 CGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT---AACGTTC 7343
||| || | | || ||||| |||||| | | || ||| || || | || |
Sbjct 38831 TGCCCTCAAAGAGAGAGTCAATCTCAATGCTGGCCTG---CGTGGAGGAGCTGAGGGTGC 38887
Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATAT 7403
|||| || | |||||| || || || | || | | || ||| ||| || | || |
Sbjct 38888 GCTTGGCCCTCTCACAAGCTGTGCGCAGCCGCCTCACCGCTCGCTTGTTGCCAGCGATGT 38947
Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAAT 7463
| ||| || || || || || ||||| ||||| | | | || || |
Sbjct 38948 CACGCTTGTGCTTGCGCTTGAATTCTTCCACAAAGTGGTTCACCATGCGGTTGTCAAAGT 39007
Query 7464 CTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAA 7523
| || |||||||| || || || || || || | || || ||||| || || |||| |
Sbjct 39008 CCTCCCCACCCAAATGGGTGTCACCAGCTGTGGACTTTACCTCAAAAATCCCATCTTCGA 39067
Query 7524 TGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTAT 7583
|| | | | || ||||| || || || || ||||||||||| ||||| || ||| | |
Sbjct 39068 TGGTAAGGATGGAGACATCGAAAGTGCCCCCTCCCAGGTCAAAGATGAGCACATTCTTCT 39127
Query 7584 CGTCGTC------TTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCAT 7637
| || | | ||||| || || || || || ||||| || || || || ||||
Sbjct 39128 CTCCGGCCCGGGTTCCTTTCTTGTCCAGGCCATAAGCAATAGCGGCTGCAGTGGGCTCAT 39187
Query 7638 TAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696
| || ||||| | ||| || ||||||| ||||| | |||||||| || || || ||
Sbjct 39188 TGATGATACGCATCACA-TTGAGGCCAGTGATAGTGCCGGCATCTTTGGTGGCCTGGCGC 39246
Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756
|| || || || ||||| || || || || | ||| || | | || || || |||
Sbjct 39247 TGGGAGTCATTGAAGTACGCTGGCACAGTGATGACAGCATTCTGCACCTTGCACCCTAGA 39306
Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816
|| | || || || || ||||| ||||| || ||||| || ||||| || | | |
Sbjct 39307 TAGGCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCTG-GGAA 39365
Query 7817 AACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875
| || ||| | || || || | || || | | | |||| || || ||||
Sbjct 39366 GAAGGTCTTCATCTCCCCCTTGTACTCCACCTGCACCTTGGGCTT----GC--CACCCTC 39419
Query 7876 GATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTT 7932
| ||| | | | ||||| ||||| || || ||| |||| | ||||
Sbjct 39420 ATTCACCACACGGAAAGGCCAATGCTTCATGTCCGACTGCACCGTGGGGTCGTCATACTT 39479
Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992
| || || || ||||| ||||| || | ||||| |||||||||| ||| |||||
Sbjct 39480 GCGGCCTATGAGGCGCTTGGCATCGAAGATGGTGTTGGTGGGGTTCATTGCTACCTGGTT 39539
Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-G 8051
||| || || |||||||| || || || || || || || || || || | |||| |
Sbjct 39540 CTTGGCAGCATCCCCGATGAGCCGCTCTGTA---TCAGTGAAGGCCACATA-GCTGGGTG 39595
Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111
| || || || || |||||||| || || || || || | ||| || |||| || |
Sbjct 39596 TGGTGCGGTTACCCTGGTCGTTGGCGATGATCTCCACCTTGCCGTGCTGGAAGACACCCA 39655
Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148
|||| || ||||| || || | || || ||||| ||
Sbjct 39656 CGCAGGAGTACGTGGTGCCCAGGTCGATGCCGATCGC 39692
>seq59012
Length=3606
Score = 149 bits (164), Expect = 8e-31
Identities = 357/540 (66%), Gaps = 0/540 (0%)
Strand=Plus/Minus
Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099
||||| || || || |||||||||||||| || | || || || ||||| ||||| ||
Sbjct 3364 GCCCCATACGCCACAGCCTCATCGGGGTTGATGCTCTTGTTGAGCTCTTTGCCGTTGAAG 3305
Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159
| ||| | || | || || || ||||| || || || || || |||| |||||
Sbjct 3304 AAGTCCTGCAGCAGCTTCTGGATCTTGGGGATGCGCGTGGAGCCTCCCACCAGCACGATG 3245
Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219
|| | | | || || || | ||| | ||| | || | || || || || ||||
Sbjct 3244 TCGTGGATCTGAGACTTGTCCAGCTTGGCGTCCCTCAGCGCCTTCTCCACGGGGTCCAGG 3185
Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279
|||||||| ||| || ||||| || || || | ||| ||||| || |||
Sbjct 3184 GTGCCACGGAACAGGTCGGCGTTGAGCTCCTCGAAGCGAGCCCTGGTGATGGAGGTGTAG 3125
Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339
|| || | ||| ||||| | || || || || ||| | | || | | || || | |
Sbjct 3124 AAGTCGATGCCCTCGTAGAGGGAGTCGATCTCGATGCTGGCCTGGGTGGAGGAGGACAGC 3065
Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399
|| ||||| |||||||| || || || || | || || | ||| ||| ||| ||
Sbjct 3064 GTGCGCTTGGCGCGCTCGCAGGCGGTGCGCAGGCGGCGCACGGCGCGCTTGTTCTCGCTG 3005
Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459
|| || ||||| || || || || ||||| | |||||| | | | |||
Sbjct 3004 ATGTCCTTCTTGTGCTTGCGCTTGAACTCGGCGATGAAGTGGTTCACCATGCGGTTGTCG 2945
Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519
|| || || || |||||||| || |||||||| || | ||| || || ||||| || ||
Sbjct 2944 AAGTCCTCCCCGCCCAAGTGGGTGTCCCCCGCCGTGGATTTCACCTCGAAGATGCCGTCT 2885
Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579
|| ||| | | | || || || || || || || |||||||| || ||||| ||||||
Sbjct 2884 TCGATGGTCAGGATGGACACGTCGAAGGTGCCGCCGCCCAGGTCGAAGATGAGCACGTTC 2825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 632683727923200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |