Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq192473 96.9 4e-15
seq22071 82.4 9e-11
>seq192473
Length=894
Score = 96.9 bits (106), Expect = 4e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 106484 ACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTA 106543
||| || ||| ||||| |||||||| | || || || |||| |||| | |||
Sbjct 430 ACACCCACCTCCTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTG 489
Query 106544 ATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAG 106603
|| || |||| |||| ||||| ||||| ||||||| | ||||||||||||||||||
Sbjct 490 ATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAG 549
Query 106604 GGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644
|| || || ||||| ||||| |||| || || || | |||
Sbjct 550 GGGGTGCCAGTCTCAGTCTGGGACTCGATGATGGCGTACCA 590
>seq22071
Length=8576
Score = 82.4 bits (90), Expect = 9e-11
Identities = 94/124 (76%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 117293 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTCT 117352
||||||||| | |||||||||||| ||||| | || ||||| || |||| |||||
Sbjct 8419 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 8360
Query 117353 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411
||| |||| | ||||| ||| || || || || |||||||| || ||||| |||||
Sbjct 8359 TCAGCCAAAATATAGCAGCA-AAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAG 8301
Query 117412 GCAA 117415
||||
Sbjct 8300 GCAA 8297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 587705834035200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |