Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq82011 120 3e-22 seq22071 111 2e-19 >seq82011 Length=15829 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | |||||||||||| || | |||||||| | ||||||||| | Sbjct 12613 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 12672 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| || || || ||||| || ||||||||||| || ||||| || |||||||| | Sbjct 12673 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAGG 12732 Query 19103 CAACTAGTCTTTCTCC 19118 | |||| | |||||| Sbjct 12733 CTACTACGCGTTCTCC 12748 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 4/89 (4%) Strand=Plus/Plus Query 19244 TCAATAA----ACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAA 19299 ||||||| |||||||||||||||||| |||||||| || || ||||| || || || Sbjct 14300 TCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCTGGAAGCCATAG 14359 Query 19300 AAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| | |||||||| || |||||||| Sbjct 14360 AAACAACGAGCTTCTGTGATTTGTACTTC 14388 >seq22071 Length=8576 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| || || || || ||||||||||| || || || | Sbjct 8419 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 8360 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||| ||||||| |||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 8359 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 8300 Query 19103 CAACTAGTCTTTCTCC 19118 |||| | ||| || || Sbjct 8299 CAACCACTCTCTCACC 8284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559941308467200