Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq192473 136 7e-27
seq62718 127 4e-24
seq248169 125 1e-23
seq115613 118 2e-21
seq155070 114 2e-20
seq162232 102 2e-16
seq164438 98.7 2e-15
seq149655 84.2 4e-11
>seq192473
Length=894
Score = 136 bits (150), Expect = 7e-27
Identities = 128/163 (79%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|||||||||| |||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 451 GTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 510
Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647
|| ||| |||| || |||||||||||||||||||||| || ||||| ||||
Sbjct 511 TTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGG 570
Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690
||| | | || | |||||| | | |||||| |||||||
Sbjct 571 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 613
>seq62718
Length=1161
Score = 127 bits (140), Expect = 4e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
|| |||| ||| ||||| ||||| ||||| || || || | | ||||| || ||
Sbjct 293 AGCACCTTCTGCTTGAGCTGGGCGACCTGCTCGCGGAGCAGGCTGGCGGTGGAGGCGAGC 234
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | |||||| |||||| |||||||||||||| | ||| || |||||
Sbjct 233 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGCCGGGAGATCCGCTCCAGC 174
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
|| | | |||||| |||| ||| || | |||||||| || | ||| ||||||||||||
Sbjct 173 TTCCTCTTGCGGCACTTGGAGGCGGCGATGCGGTTCCTCAGCCGCTTCCGTTCCGCCTTG 114
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||| ||||| ||||||||||| || |||
Sbjct 113 ATGCGCTCCTGCGTGTCCATGTCGATGGGGGAC 81
>seq248169
Length=378
Score = 125 bits (138), Expect = 1e-23
Identities = 155/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200
|| ||||| || || ||||||||| | | ||||||||| |||||| ||||||||||
Sbjct 267 CCCTTGCTGACCGGAGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCA 208
Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTG 213260
||| |||| |||||| ||||||| ||||| ||||| || | | ||||||| || |
Sbjct 207 CAGCTGGCCTCCAGGGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAGCAGCTGG 148
Query 213261 GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACC 213320
|||| | | | |||||| | | |||| | ||| | || ||||| ||||| ||
Sbjct 147 GCCTGGGCGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACG 88
Query 213321 CCGATGCCGATGGGTCTGTGTCTCAGGTTAGA 213352
|||||||||||||| | ||| | | |||| ||
Sbjct 87 CCGATGCCGATGGGGCGGTGCCGCCGGTTGGA 56
>seq115613
Length=563
Score = 118 bits (130), Expect = 2e-21
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 241430 AGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGAC 241489
|| |||| |||||| | || || | | ||||| || ||| | ||||| | |
Sbjct 293 AGCTGGGTGACCTGGGCGCGGAGGAGGTTGGCGGTGGCGGCCAGCTCGGCGTTCTGCCCC 234
Query 241490 TTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCAT 241549
|||||| ||||||| |||||||||||||| |||||||| ||||| || |||||||||||
Sbjct 233 TTGAGCGCCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCGCCGGCGGCAC 174
Query 241550 TTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCC 241609
|| | ||| || | |||||| || || | ||| || || ||||| | || |||||| |
Sbjct 173 TTAGAGGCGGCGATGCGGTTTCGCAGCCGCTTGCGCTCTGCCTTCAGCCGCTCCTGGCTC 114
Query 241610 TCCATGTCGATCGGAGAC 241627
||| ||| | ||| |||
Sbjct 113 TCCGCGTCTAGCGGCGAC 96
>seq155070
Length=997
Score = 114 bits (126), Expect = 2e-20
Identities = 116/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872
||||||| |||||| || || |||| ||| || || |||||||||||||| | | |
Sbjct 645 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTGC 586
Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932
|| ||| || | ||| || ||| || || || |||||||||||| ||||||||||
Sbjct 585 TCTTCCTTCCCTGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 526
Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963
|||| |||||||||||| || || |||||||
Sbjct 525 TCCAAGTAGATGGCAAAAGCCCCAGGCCTCT 495
>seq162232
Length=2230
Score = 102 bits (112), Expect = 2e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977
|||||| || || ||||| ||||| | ||| | ||| |||||||||||||||
Sbjct 1329 CTGGAACTCCCCCGAGAGGACCCTGCGTGTGTAGATGTTGCTGGTGTAGGGCTCGATGGA 1270
Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037
||||||||| ||||| ||||| |||||| |||||| |||||||| | | ||||| ||
Sbjct 1269 CTCGTTGTTGCCCAGGATCTGGGCAGTGGAGGCTGTTGGCATGGGGGAGATGAGGAGGCT 1210
Query 213038 GTTCCTCACTCCGT 213051
|||||| || ||||
Sbjct 1209 GTTCCTGACACCGT 1196
>seq164438
Length=463
Score = 98.7 bits (108), Expect = 2e-15
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 212696 GTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATC 212755
|||||||||||| |||||||| ||||| | | ||||| || ||||| | | |||
Sbjct 116 GTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCTGCCATCTTCAGGATGGT 175
Query 212756 TCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGG 212815
| ||||||||| |||||||||||||||| ||| | || ||||| || |||| | ||
Sbjct 176 TTTCTGGGAGATCTCCCACACGGTCTTGTAGAGCTGCTTCAGGTCATCGGGGATCTCAGG 235
Query 212816 GATGTTCTG 212824
|||||||||
Sbjct 236 GATGTTCTG 244
>seq149655
Length=3370
Score = 84.2 bits (92), Expect = 4e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 38967 TCCCACCTGTTGGCGGAGAAGAGCAGGTGGACTGCGTGGTCGTCCAGCTCCGTCTTACTC 39026
||||| | |||||| |||||||||||||| | | |||||| ||||| | | ||| |||
Sbjct 2412 TCCCAGCGGTTGGCAGAGAAGAGCAGGTGAATGGTGTGGTCTTCCAGGTTCTTCTCCCTC 2471
Query 39027 TCCAGGTACGAGCTGATCATCTTTCCGATGGTAGTGGTTCTGTC 39070
||||||| |||||||||| || || || |||||||||||
Sbjct 2472 CCCAGGTAGGAGCTGATCAGCTGCCCAATCTCTGTGGTTCTGTC 2515
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 927940809523200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |