Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq192473 100 5e-16
seq155070 98.7 2e-15
>seq192473
Length=894
Score = 100 bits (110), Expect = 5e-16
Identities = 105/137 (77%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 221723 CACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCAC 221782
||||| ||||||| |||||| |||| |||| | |||||| || || ||||||||||||
Sbjct 429 CACAC--CCACCTCCTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCAC 486
Query 221783 TTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATA 221842
|||||||| ||||||| | || || ||| | ||| | |||||||||||||||
Sbjct 487 TTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATG 546
Query 221843 AAGGGACCGCCAGTCTC 221859
|||| |||||||||
Sbjct 547 TAGGGGGTGCCAGTCTC 563
>seq155070
Length=997
Score = 98.7 bits (108), Expect = 2e-15
Identities = 117/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078
|| |||| || || |||| ||||||||| || |||||||| || || || || ||
Sbjct 658 CTGGTTGGTTTCCACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTC 599
Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138
|||| |||||||| ||| || |||| ||| |||| |||| |||||||| |||||
Sbjct 598 CCTGGCTCGCTGCTCTTCCTTCCCTGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTC 539
Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177
|||||||||||||| |||| ||| | ||| || ||
Sbjct 538 CAAGTGCCACGGCTCCAAGTAGATGGCAAAAGCCCCAGG 500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 925263174451200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |