Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq192473 100 5e-16 seq155070 98.7 2e-15 >seq192473 Length=894 Score = 100 bits (110), Expect = 5e-16 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 221723 CACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCAC 221782 ||||| ||||||| |||||| |||| |||| | |||||| || || |||||||||||| Sbjct 429 CACAC--CCACCTCCTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCAC 486 Query 221783 TTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATA 221842 |||||||| ||||||| | || || ||| | ||| | ||||||||||||||| Sbjct 487 TTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATG 546 Query 221843 AAGGGACCGCCAGTCTC 221859 |||| ||||||||| Sbjct 547 TAGGGGGTGCCAGTCTC 563 >seq155070 Length=997 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || |||| ||||||||| || |||||||| || || || || || Sbjct 658 CTGGTTGGTTTCCACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTC 599 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 |||| |||||||| ||| || |||| ||| |||| |||| |||||||| ||||| Sbjct 598 CCTGGCTCGCTGCTCTTCCTTCCCTGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTC 539 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGG 222177 |||||||||||||| |||| ||| | ||| || || Sbjct 538 CAAGTGCCACGGCTCCAAGTAGATGGCAAAAGCCCCAGG 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 925263174451200