Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq18740 228 9e-55
seq303695 134 2e-26
>seq18740
Length=6788
Score = 228 bits (252), Expect = 9e-55
Identities = 658/1004 (66%), Gaps = 10/1004 (1%)
Strand=Plus/Plus
Query 160033 AGAT-CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACG 160091
|||| ||| | | |||| |||| || || |||| |||| || || || ||| ||
Sbjct 5418 AGATACAGAGCTTTGTGCCGCAAATACTCTTCCAAGCATTTCACTGCAAAAGGGTCCACA 5477
Query 160092 TCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCT 160151
|| || || ||||| || || || ||||| ||| |||| ||||||| || ||||
Sbjct 5478 TCAGTATCAAACTTATTAGCAAATAGGTGGTG---GTTTCGTAGCATCCAGTTCAAGTCT 5534
Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211
|| || || || ||||| || || ||||| || || |||| || ||||| | ||
Sbjct 5535 CCTACTCCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGCGCA 5594
Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271
||||| | |||||||||||| ||||||||||||| ||||||||||| | || | ||||
Sbjct 5595 CCTTTGGACACGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATG 5654
Query 160272 TCGGAGGTGTCGTATTTGTACATCAGG--GGAACGGCACCGGGAACGCCGGGCATACGCT 160329
|| || |||||| |||| || | || | || ||||| || || | || || | ||
Sbjct 5655 TCAGAAACGTCGTACTTGT-CA-CTGGAAGAAAATGCACCTGGGACTTCAGGGATTCTCT 5712
Query 160330 GTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389
| | || |||||||||| || || |||||||| || || || | ||| || |||||||
Sbjct 5713 GAATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATGAACT 5772
Query 160390 CTCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACG 160449
||| |||| | || | || || |||| | || ||||| || |
Sbjct 5773 TAAGTATTTTGCTGTTTTCTAATACATATCCTACAAAGCTTCTGCTAACTACAAAATAGG 5832
Query 160450 CGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAG 160509
| ||||| || || | ||| || | || || | |||||| || |||||
Sbjct 5833 CACTGCCAGAAAAAACCGGAGTGCTCAGGGGTGGAAGTTGTTTGTCTATGCCTGTGTTCT 5892
Query 160510 ACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCA 160569
| || | | | | | || | ||||||||||| || || | ||||
Sbjct 5893 TTATTTTACCATCAATAATCTCATGGTGTTTCTTCCACCTTACTTCTTTATAAATAGGCA 5952
Query 160570 TGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTA 160629
| ||| || || | ||||| |||| | || | ||| | | || || || ||
Sbjct 5953 TTTTTTCTGTTTCCAAGCTGTTTTCACCCTTAAGAGCTTTTAATTTCTCCACTATTTCCT 6012
Query 160630 GGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC 160689
|||| ||||| | |||||||| |||| || | |||||| | || ||||| || | |
Sbjct 6013 GGTTGGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGATATTTCCAGTTTGAAC 6072
Query 160690 TCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGT 160749
| || || || ||||||| ||||| ||||||||||| | |||||| ||||| |
Sbjct 6073 TTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCAT 6132
Query 160750 ACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA 160809
| || || |||||| | |||| | |||||| ||||| ||||| || || ||||||
Sbjct 6133 ATACCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCT 6192
Query 160810 CCACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTC 160868
||| | ||| || || || | | |||| ||| || || | ||| || | |||
Sbjct 6193 TCACAG-CAGCAAAAAAGGATTCTGGAGACTTTTTGTCTACATGGATGCAGTAAAAATTC 6251
Query 160869 TGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACG 160928
|| || || || || | || || | || || | |||||| || || |||| | |||
Sbjct 6252 TGTGGAGCATATATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACT 6311
Query 160929 ATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTT 160988
|| ||||| || || ||||| || | || || ||| || | | | | ||| ||
Sbjct 6312 ATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTACTGAGAGGTTCCATAATGTATTTC 6371
Query 160989 CGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032
| |||||| | || | |||| || |||||||| |||||
Sbjct 6372 CTAGTCTTGGTGAAGGAGGCACAGTCTGCAGTCATGTTAATATA 6415
>seq303695
Length=2500
Score = 134 bits (148), Expect = 2e-26
Identities = 237/345 (69%), Gaps = 3/345 (1%)
Strand=Plus/Plus
Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104
|||| ||||| | || || ||||| |||||||| |||| || || |||||| |
Sbjct 849 TGTGGCGCAGGTACTCCTCGAGACACTGGACGGCCGCATCGTCCACCTCGGGGTCGAACT 908
Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164
| || || || |||||||| | ||| || |||||| ||||||| || |||| | |
Sbjct 909 TGTTGGCCAAGAGATGGTGC---TGCTGCAGCATCCAGGGCACGTCGCCCACCCCGTAGA 965
Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224
|||||||| || ||| |||| ||||||||||||| || || || | ||
Sbjct 966 TGCAGACGGCGCGCTGGTGGCGGCCGGTGCAAGGCGGGTAGGACGCGCCCTTGCTGATGT 1025
Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284
| || || | |||||||||| || | | || | || | |||||| ||| | ||
Sbjct 1026 CCCCCTCCATGAACTGCCACTTGACTAGGCGGGGAAGGGCGTTCATGTCCGAGAGCTGGT 1085
Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344
| |||| | | ||| | | || || || || ||||| || | ||||||||||| |
Sbjct 1086 ACTTGTCGCTGAAGGGCGTGCCCCCCGGCACACCCGGCATGCGGTTCAGGGTGGCCCAGA 1145
Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389
||| ||||| |||||||| ||||||| ||||| || | |||||
Sbjct 1146 CGTGCTCGTCAGGGCTGTAGCTGTCCTTGGACCACTCGAGGAACT 1190
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 574993442764800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |