Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq18740 228 9e-55 seq303695 134 2e-26 >seq18740 Length=6788 Score = 228 bits (252), Expect = 9e-55 Identities = 658/1004 (66%), Gaps = 10/1004 (1%) Strand=Plus/Plus Query 160033 AGAT-CAGCGATCTGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACG 160091 |||| ||| | | |||| |||| || || |||| |||| || || || ||| || Sbjct 5418 AGATACAGAGCTTTGTGCCGCAAATACTCTTCCAAGCATTTCACTGCAAAAGGGTCCACA 5477 Query 160092 TCTTCGTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCT 160151 || || || ||||| || || || ||||| ||| |||| ||||||| || |||| Sbjct 5478 TCAGTATCAAACTTATTAGCAAATAGGTGGTG---GTTTCGTAGCATCCAGTTCAAGTCT 5534 Query 160152 CCGGACCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCT 160211 || || || || ||||| || || ||||| || || |||| || ||||| | || Sbjct 5535 CCTACTCCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGCGCA 5594 Query 160212 CCTTTCGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATG 160271 ||||| | |||||||||||| ||||||||||||| ||||||||||| | || | |||| Sbjct 5595 CCTTTGGACACGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATG 5654 Query 160272 TCGGAGGTGTCGTATTTGTACATCAGG--GGAACGGCACCGGGAACGCCGGGCATACGCT 160329 || || |||||| |||| || | || | || ||||| || || | || || | || Sbjct 5655 TCAGAAACGTCGTACTTGT-CA-CTGGAAGAAAATGCACCTGGGACTTCAGGGATTCTCT 5712 Query 160330 GTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 | | || |||||||||| || || |||||||| || || || | ||| || ||||||| Sbjct 5713 GAATTGTTGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATGAACT 5772 Query 160390 CTCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACG 160449 ||| |||| | || | || || |||| | || ||||| || | Sbjct 5773 TAAGTATTTTGCTGTTTTCTAATACATATCCTACAAAGCTTCTGCTAACTACAAAATAGG 5832 Query 160450 CGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAG 160509 | ||||| || || | ||| || | || || | |||||| || ||||| Sbjct 5833 CACTGCCAGAAAAAACCGGAGTGCTCAGGGGTGGAAGTTGTTTGTCTATGCCTGTGTTCT 5892 Query 160510 ACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCA 160569 | || | | | | | || | ||||||||||| || || | |||| Sbjct 5893 TTATTTTACCATCAATAATCTCATGGTGTTTCTTCCACCTTACTTCTTTATAAATAGGCA 5952 Query 160570 TGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTA 160629 | ||| || || | ||||| |||| | || | ||| | | || || || || Sbjct 5953 TTTTTTCTGTTTCCAAGCTGTTTTCACCCTTAAGAGCTTTTAATTTCTCCACTATTTCCT 6012 Query 160630 GGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC 160689 |||| ||||| | |||||||| |||| || | |||||| | || ||||| || | | Sbjct 6013 GGTTGGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGATATTTCCAGTTTGAAC 6072 Query 160690 TCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGT 160749 | || || || ||||||| ||||| ||||||||||| | |||||| ||||| | Sbjct 6073 TTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCAT 6132 Query 160750 ACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA 160809 | || || |||||| | |||| | |||||| ||||| ||||| || || |||||| Sbjct 6133 ATACCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCT 6192 Query 160810 CCACCGCCAGAAAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTC 160868 ||| | ||| || || || | | |||| ||| || || | ||| || | ||| Sbjct 6193 TCACAG-CAGCAAAAAAGGATTCTGGAGACTTTTTGTCTACATGGATGCAGTAAAAATTC 6251 Query 160869 TGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACG 160928 || || || || || | || || | || || | |||||| || || |||| | ||| Sbjct 6252 TGTGGAGCATATATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACT 6311 Query 160929 ATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTT 160988 || ||||| || || ||||| || | || || ||| || | | | | ||| || Sbjct 6312 ATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTACTGAGAGGTTCCATAATGTATTTC 6371 Query 160989 CGCGTCTTGATAAAATAATCACAATCCCGCGTCATGTTGATATA 161032 | |||||| | || | |||| || |||||||| ||||| Sbjct 6372 CTAGTCTTGGTGAAGGAGGCACAGTCTGCAGTCATGTTAATATA 6415 >seq303695 Length=2500 Score = 134 bits (148), Expect = 2e-26 Identities = 237/345 (69%), Gaps = 3/345 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||| ||||| | || || ||||| |||||||| |||| || || |||||| | Sbjct 849 TGTGGCGCAGGTACTCCTCGAGACACTGGACGGCCGCATCGTCCACCTCGGGGTCGAACT 908 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 | || || || |||||||| | ||| || |||||| ||||||| || |||| | | Sbjct 909 TGTTGGCCAAGAGATGGTGC---TGCTGCAGCATCCAGGGCACGTCGCCCACCCCGTAGA 965 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 |||||||| || ||| |||| ||||||||||||| || || || | || Sbjct 966 TGCAGACGGCGCGCTGGTGGCGGCCGGTGCAAGGCGGGTAGGACGCGCCCTTGCTGATGT 1025 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | || || | |||||||||| || | | || | || | |||||| ||| | || Sbjct 1026 CCCCCTCCATGAACTGCCACTTGACTAGGCGGGGAAGGGCGTTCATGTCCGAGAGCTGGT 1085 Query 160285 ATTTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACA 160344 | |||| | | ||| | | || || || || ||||| || | ||||||||||| | Sbjct 1086 ACTTGTCGCTGAAGGGCGTGCCCCCCGGCACACCCGGCATGCGGTTCAGGGTGGCCCAGA 1145 Query 160345 GGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT 160389 ||| ||||| |||||||| ||||||| ||||| || | ||||| Sbjct 1146 CGTGCTCGTCAGGGCTGTAGCTGTCCTTGGACCACTCGAGGAACT 1190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574993442764800