Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_020864.1
Length=205622
Score E
Sequences producing significant alignments: (Bits) Value
seq121263 333 3e-86
seq59012 107 3e-18
seq2417 89.7 7e-13
seq181449 87.8 2e-12
>seq121263
Length=54079
Score = 333 bits (368), Expect = 3e-86
Identities = 1047/1599 (65%), Gaps = 41/1599 (3%)
Strand=Plus/Minus
Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358
|| || || ||||| | || || || ||||| || || ||||| | || | |
Sbjct 39692 GCGATCGGCATCGACCTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCACGGCAAG 39633
Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418
|| ||||| ||| | || ||||| || ||||| || || || || || ||||| ||
Sbjct 39632 GTGGAGATCATCGCCAACGACCAGGGTAACCGCACCACACCCAGCTATGTGGCCTTCACT 39573
Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478
|||| || || ||| | || ||||| || || || ||| ||| |||||||| | |||
Sbjct 39572 GATACAGAGCGGCTCATCGGGGATGCTGCCAAGAACCAGGTAGCAATGAACCCCACCAAC 39513
Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538
|| |||| || || ||||| || || || ||||||| | || | || ||
Sbjct 39512 ACCATCTTCGATGCCAAGCGCCTCATAGGCCGCAAGTATGACGACCCCACGGTGCAGTCG 39453
Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598
|| || ||| | ||| ||| || || || || || ||||| | | | |
Sbjct 39452 GACATGAAGCATTGGCCTTTCCGTGTGGTGAA---TGAGGGTGGCAAGCCCAAGGTGCAG 39396
Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTT 195657
|| || | | || |||| ||| | || |||| || || || || |||||| |
Sbjct 39395 GTGGAGTACAAGGGGGAGATGAAG-ACCTTCTTCCCAGAGGAGATCAGCTCCATGGTGCT 39337
Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTT-TCATGGGTAAAACTGTGAAAGATGCAGTTG 195716
| ||||||||||||| ||| || | | || |||| || ||| | |||| ||
Sbjct 39336 CACCAAGATGAAGGAGATTGCTGAGGCCTATCTAGGGTGCAAG-GTGCAGAATGCTGTCA 39278
Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776
| ||||| || || ||||||| ||| || || || ||||| || || || || | |||
Sbjct 39277 TCACTGTGCCAGCGTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCCGGCACTA 39218
Query 195777 TTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835
| | || || || ||| | | || |||||||| || || || || || |||||||||
Sbjct 39217 TCACTGGCCTCAA-TGTGATGCGTATCATCAATGAGCCCACTGCAGCCGCTATTGCTTAT 39159
Query 195836 GGTCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGT 195889
|| ||||||||||| | || || ||| || ||||| | |||||||| || ||
Sbjct 39158 GGCCTGGACAAGAAAGGAACCCGGGCCGGAGAGAAGAATGTGCTCATCTTTGACCTGGGA 39099
Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCT 195949
|| || || || |||||||| | || | || |||| ||| || || || |||||| |
Sbjct 39098 GGGGGCACTTTCGATGTCTCCATCCTTACCATCGAAGATGGGATTTTTGAGGTAAAGTCC 39039
Query 195950 ACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTT 196008
|| |||||||| || ||| | ||||| || || || || || | | || |||
Sbjct 39038 ACAGCTGGTGACACCCATTTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCACTTT 38979
Query 196009 GTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCG 196068
|| || || ||| || ||| | ||| || || |||| || | || | |
Sbjct 38978 GT-GGAAGAATTCAAGCGCAAGCACAAGCGTGACATCGCTGGCAACAAGCGAGCGGTGAG 38920
Query 196069 TCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCT---CTCTTCTACGGCTCAAAC 196125
||||| | || || ||||| | ||||| || || || ||| || ||| || |
Sbjct 38919 GCGGCTGCGCACAGCTTGTGAGAGGGCCAAGCGCACCCTCAGCTCCTCCACG---CAGGC 38863
Query 196126 AATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGC 196185
| |||||||||| || | ||||| || ||||||||||| || | ||||| |||||
Sbjct 38862 CAGCATTGAGATTGACTCTCTCTTTGAGGGCATTGACTTCTACACTTCCATTACTCGTGC 38803
Query 196186 ACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGT 196245
||||| || ||| | || |||| | || | |||| || || || | |
Sbjct 38802 CCGTTTCGAGGAGCTCAATGCTGACCTCTTCCGTGGCACCCTGGAGCCGGTGGAGAAGGC 38743
Query 196246 ACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATC 196305
|| |||||||| ||| | || ||| || | | || || || || ||||| || ||
Sbjct 38742 TCTGCGTGACGCCAAGCTCGACAAGGGCCAGATCCAGGAGATCGTGCTGGTGGGTGGCTC 38683
Query 196306 AACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG--CTTCTTCAATAATAAAGATTTA 196363
||||| || || ||||| || || ||| || || ||||||||| ||||| |
Sbjct 38682 TACCCGGATCCCCAAGATCCAGAAGCTGC--TCCAGGATTTCTTCAATGGCAAAGAGCTC 38625
Query 196364 AACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATT 196423
||||| | |||||||| ||||| || || ||||| || || ||||| || || |||||
Sbjct 38624 AACAAGAGCATCAACCCCGATGAGGCTGTGGCTTACGGCGCTGCCGTACAAGCAGCTAT- 38566
Query 196424 CTCTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCC 196480
|||| | | ||||| | | ||||| || ||||| ||||| | ||||| | ||
Sbjct 38565 -CCTCATG-GGAGACAAGTCTGAGAACGTGCAGGATCTGCTGCTGTTGGATGTCACCCCT 38508
Query 196481 GTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACA 196540
| |||||||| |||| || || || || || |||||| | || | | |||||
Sbjct 38507 CTGTCCCTGGGCATTGAGACGGCTGGAGGGGTGATGACTGCTCTCATCAAGCGCAACACC 38448
Query 196541 ACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGT 196599
|| || || || || | || ||| | || || || || || || | || | ||
Sbjct 38447 ACCATCCCCACCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAGCA-GCGT 38389
Query 196600 TCATATTCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGG 196656
| | || || ||||||| |||| ||| || ||| ||||||| | || || ||
Sbjct 38388 CCTCGTCCAGGTGTATGAAGGTGAGAGGGCT---ATGACAAGGGATAACAACCTGCTGGG 38332
Query 196657 AACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTG 196716
| || || | || || || || | |||||||| || || || ||||| | ||
Sbjct 38331 CAAGTTTGACCTAACAGGCATCCCCCCAGCACCCAGGGGAGTCCCCCAGATCGAGGTCAC 38272
Query 196717 CTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAA 196776
|| || || || || ||||| || || ||||||| || | ||||||| | || ||
Sbjct 38271 TTTTGACATCGATGCCAATGGTATCCTGAACGTCAGCGCCGTGGACAAGAGCACGGGTAA 38212
Query 196777 ATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACG 196836
| ||||| || |||||||||||||| || || ||||| || || || ||
Sbjct 38211 GGAGAACAAGATCACCATCACCAATGACAAGGGTCGCCTCAGCAAGGACGACATCGACCG 38152
Query 196837 TATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875
|||||| ||||| || || ||||||| | ||| || ||
Sbjct 38151 TATGGTGCAAGAAGCAGAGAAGTACAAAGCAGAGGATGA 38113
>seq59012
Length=3606
Score = 107 bits (118), Expect = 3e-18
Identities = 109/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767
||||||| |||||||| || || || |||| ||| || || || ||||| ||||| || |
Sbjct 2579 ATGCAGTAGTGACTGTCCCAGCCTATTTCAATGACTCCCAGCGCCAGGCAACAAAAGATG 2638
Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827
||| |||| || || || ||| || ||||| ||||| || || ||||| ||||| |
Sbjct 2639 CTGGAACTATCGCAGGGCTCAACGTCCTGAGAATCATCAACGAGCCCACAGCAGCTGCCA 2698
Query 195828 TTGCTTATGGTCTGGACAAGAA 195849
|||| || || |||||||||||
Sbjct 2699 TTGCCTACGGGCTGGACAAGAA 2720
>seq2417
Length=632
Score = 89.7 bits (98), Expect = 7e-13
Identities = 81/102 (79%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921
||||| ||||| ||||| ||||| || || ||||| |||||||| ||||| ||| |
Sbjct 102 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTGGAGCCCAAT 43
Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAA 171963
||||| ||||| ||| | ||||||||||| || || ||||||
Sbjct 42 GACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAA 1
>seq181449
Length=4937
Score = 87.8 bits (96), Expect = 2e-12
Identities = 124/174 (71%), Gaps = 3/174 (2%)
Strand=Plus/Minus
Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873
|||||| ||||| |||||||| || |||||||||| ||| ||| || || | |
Sbjct 2631 AACAGCTGCTGCCATTGCTTACGGACTGGACAAGAGAGAGGG---AGAGAAGAACATCCT 2575
Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933
| || || || || ||||| || |||||||| || || |||| ||||| || |
Sbjct 2574 CGTATTCGACCTGGGCGGTGGAACCTTTGATGTGTCCCTCCTCACAATTGACAACGGAGT 2515
Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987
|| ||||| ||||||| |||||||||||| | ||||| ||||| || ||
Sbjct 2514 CTTTGAAGTTGTGGCTACTAATGGTGATACTCACTTGGGTGGAGAAGACTTTGA 2461
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 655325682585600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |