Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq121263 333 3e-86 seq59012 107 3e-18 seq2417 89.7 7e-13 seq181449 87.8 2e-12 >seq121263 Length=54079 Score = 333 bits (368), Expect = 3e-86 Identities = 1047/1599 (65%), Gaps = 41/1599 (3%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| | || || || ||||| || || ||||| | || | | Sbjct 39692 GCGATCGGCATCGACCTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCACGGCAAG 39633 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| | || ||||| || ||||| || || || || || ||||| || Sbjct 39632 GTGGAGATCATCGCCAACGACCAGGGTAACCGCACCACACCCAGCTATGTGGCCTTCACT 39573 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| || || ||| | || ||||| || || || ||| ||| |||||||| | ||| Sbjct 39572 GATACAGAGCGGCTCATCGGGGATGCTGCCAAGAACCAGGTAGCAATGAACCCCACCAAC 39513 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || |||| || || ||||| || || || ||||||| | || | || || Sbjct 39512 ACCATCTTCGATGCCAAGCGCCTCATAGGCCGCAAGTATGACGACCCCACGGTGCAGTCG 39453 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| | ||| ||| || || || || || ||||| | | | | Sbjct 39452 GACATGAAGCATTGGCCTTTCCGTGTGGTGAA---TGAGGGTGGCAAGCCCAAGGTGCAG 39396 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCC-GAAGAAATTTCGTCTATGGTGTT 195657 || || | | || |||| ||| | || |||| || || || || |||||| | Sbjct 39395 GTGGAGTACAAGGGGGAGATGAAG-ACCTTCTTCCCAGAGGAGATCAGCTCCATGGTGCT 39337 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTT-TCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | ||||||||||||| ||| || | | || |||| || ||| | |||| || Sbjct 39336 CACCAAGATGAAGGAGATTGCTGAGGCCTATCTAGGGTGCAAG-GTGCAGAATGCTGTCA 39278 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | ||||| || || ||||||| ||| || || || ||||| || || || || | ||| Sbjct 39277 TCACTGTGCCAGCGTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCCGGCACTA 39218 Query 195777 TTGCGGGTCTAAACTGTCTTA-GAATTATCAATGAACCAACAGCGGCTGCAATTGCTTAT 195835 | | || || || ||| | | || |||||||| || || || || || ||||||||| Sbjct 39217 TCACTGGCCTCAA-TGTGATGCGTATCATCAATGAGCCCACTGCAGCCGCTATTGCTTAT 39159 Query 195836 GGTCTGGACAAGAA------CAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGT 195889 || ||||||||||| | || || ||| || ||||| | |||||||| || || Sbjct 39158 GGCCTGGACAAGAAAGGAACCCGGGCCGGAGAGAAGAATGTGCTCATCTTTGACCTGGGA 39099 Query 195890 GGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCT 195949 || || || || |||||||| | || | || |||| ||| || || || |||||| | Sbjct 39098 GGGGGCACTTTCGATGTCTCCATCCTTACCATCGAAGATGGGATTTTTGAGGTAAAGTCC 39039 Query 195950 ACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTT 196008 || |||||||| || ||| | ||||| || || || || || | | || ||| Sbjct 39038 ACAGCTGGTGACACCCATTTGGGTGGGGAGGACTTTGACAACCGCATGGTGAACCACTTT 38979 Query 196009 GTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCG 196068 || || || ||| || ||| | ||| || || |||| || | || | | Sbjct 38978 GT-GGAAGAATTCAAGCGCAAGCACAAGCGTGACATCGCTGGCAACAAGCGAGCGGTGAG 38920 Query 196069 TCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCT---CTCTTCTACGGCTCAAAC 196125 ||||| | || || ||||| | ||||| || || || ||| || ||| || | Sbjct 38919 GCGGCTGCGCACAGCTTGTGAGAGGGCCAAGCGCACCCTCAGCTCCTCCACG---CAGGC 38863 Query 196126 AATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGC 196185 | |||||||||| || | ||||| || ||||||||||| || | ||||| ||||| Sbjct 38862 CAGCATTGAGATTGACTCTCTCTTTGAGGGCATTGACTTCTACACTTCCATTACTCGTGC 38803 Query 196186 ACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGT 196245 ||||| || ||| | || |||| | || | |||| || || || | | Sbjct 38802 CCGTTTCGAGGAGCTCAATGCTGACCTCTTCCGTGGCACCCTGGAGCCGGTGGAGAAGGC 38743 Query 196246 ACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATC 196305 || |||||||| ||| | || ||| || | | || || || || ||||| || || Sbjct 38742 TCTGCGTGACGCCAAGCTCGACAAGGGCCAGATCCAGGAGATCGTGCTGGTGGGTGGCTC 38683 Query 196306 AACCCGTATTCCGAAGATTCAACAGATGCTTTCTAG--CTTCTTCAATAATAAAGATTTA 196363 ||||| || || ||||| || || ||| || || ||||||||| ||||| | Sbjct 38682 TACCCGGATCCCCAAGATCCAGAAGCTGC--TCCAGGATTTCTTCAATGGCAAAGAGCTC 38625 Query 196364 AACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATT 196423 ||||| | |||||||| ||||| || || ||||| || || ||||| || || ||||| Sbjct 38624 AACAAGAGCATCAACCCCGATGAGGCTGTGGCTTACGGCGCTGCCGTACAAGCAGCTAT- 38566 Query 196424 CTCTCAGGTGTTGACAA---TAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCC 196480 |||| | | ||||| | | ||||| || ||||| ||||| | ||||| | || Sbjct 38565 -CCTCATG-GGAGACAAGTCTGAGAACGTGCAGGATCTGCTGCTGTTGGATGTCACCCCT 38508 Query 196481 GTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACA 196540 | |||||||| |||| || || || || || |||||| | || | | ||||| Sbjct 38507 CTGTCCCTGGGCATTGAGACGGCTGGAGGGGTGATGACTGCTCTCATCAAGCGCAACACC 38448 Query 196541 ACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCA-ACCAGGTGT 196599 || || || || || | || ||| | || || || || || || | || | || Sbjct 38447 ACCATCCCCACCAAACAAACTCAGACCTTCACCACCTACTCAGACAACCAGAGCA-GCGT 38389 Query 196600 TCATATTCAAGTATATGAAG--GAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGG 196656 | | || || ||||||| |||| ||| || ||| ||||||| | || || || Sbjct 38388 CCTCGTCCAGGTGTATGAAGGTGAGAGGGCT---ATGACAAGGGATAACAACCTGCTGGG 38332 Query 196657 AACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTG 196716 | || || | || || || || | |||||||| || || || ||||| | || Sbjct 38331 CAAGTTTGACCTAACAGGCATCCCCCCAGCACCCAGGGGAGTCCCCCAGATCGAGGTCAC 38272 Query 196717 CTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAA 196776 || || || || || ||||| || || ||||||| || | ||||||| | || || Sbjct 38271 TTTTGACATCGATGCCAATGGTATCCTGAACGTCAGCGCCGTGGACAAGAGCACGGGTAA 38212 Query 196777 ATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACG 196836 | ||||| || |||||||||||||| || || ||||| || || || || Sbjct 38211 GGAGAACAAGATCACCATCACCAATGACAAGGGTCGCCTCAGCAAGGACGACATCGACCG 38152 Query 196837 TATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 |||||| ||||| || || ||||||| | ||| || || Sbjct 38151 TATGGTGCAAGAAGCAGAGAAGTACAAAGCAGAGGATGA 38113 >seq59012 Length=3606 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 195708 ATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACG 195767 ||||||| |||||||| || || || |||| ||| || || || ||||| ||||| || | Sbjct 2579 ATGCAGTAGTGACTGTCCCAGCCTATTTCAATGACTCCCAGCGCCAGGCAACAAAAGATG 2638 Query 195768 CTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAA 195827 ||| |||| || || || ||| || ||||| ||||| || || ||||| ||||| | Sbjct 2639 CTGGAACTATCGCAGGGCTCAACGTCCTGAGAATCATCAACGAGCCCACAGCAGCTGCCA 2698 Query 195828 TTGCTTATGGTCTGGACAAGAA 195849 |||| || || ||||||||||| Sbjct 2699 TTGCCTACGGGCTGGACAAGAA 2720 >seq2417 Length=632 Score = 89.7 bits (98), Expect = 7e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || ||||| |||||||| ||||| ||| | Sbjct 102 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTGGAGCCCAAT 43 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAA 171963 ||||| ||||| ||| | ||||||||||| || || |||||| Sbjct 42 GACACCATCGAGAACGTGAAAGCCAAGATCCAGGACAAGGAA 1 >seq181449 Length=4937 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/174 (71%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 195814 AACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATT 195873 |||||| ||||| |||||||| || |||||||||| ||| ||| || || | | Sbjct 2631 AACAGCTGCTGCCATTGCTTACGGACTGGACAAGAGAGAGGG---AGAGAAGAACATCCT 2575 Query 195874 GATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTAT 195933 | || || || || ||||| || |||||||| || || |||| ||||| || | Sbjct 2574 CGTATTCGACCTGGGCGGTGGAACCTTTGATGTGTCCCTCCTCACAATTGACAACGGAGT 2515 Query 195934 ATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| ||||||| |||||||||||| | ||||| ||||| || || Sbjct 2514 CTTTGAAGTTGTGGCTACTAATGGTGATACTCACTTGGGTGGAGAAGACTTTGA 2461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655325682585600