Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq169471 84.2 6e-11 >seq169471 Length=565 Score = 84.2 bits (92), Expect = 6e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 ||||| || || || || || || || | || || ||||| || |||||||| | ||| Sbjct 176 GTTTTGACGGCCGTGTCGATGAGGCCCTCGCGGCCGCCCATGGCGTGGAAGAAGAACTCG 235 Query 302680 TCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATC 302738 || ||| || || | | ||||| |||| ||||| || || |||||| | Sbjct 236 GTGGG-CGTGAGGCCGGCCAGGTAGGAGTTCTCCACGAAGCCGCGGCTCTCGGGGCCGTA 294 Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798 |||| |||| | ||||| ||||| || | || || ||||| | ||||| ||||| || Sbjct 295 GTCGTCCTTGATGAAGTGGGGCAGCGTGCGGTGCTTGAAGCCGAAGGGGATGCGCTTGCC 354 Query 302799 ATCAACGTTCTGCTGTCCCA 302818 || ||||||||||| |||| Sbjct 355 CTCCACGTTCTGCTGCCCCA 374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1466000388117760