Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq192473 120 4e-21
seq278874 100 3e-15
seq169471 100 3e-15
seq213966 98.7 1e-14
seq82011 98.7 1e-14
seq57717 86.0 8e-11
>seq192473
Length=894
Score = 120 bits (132), Expect = 4e-21
Identities = 128/169 (76%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226
||||||||||||||||||||| || | | || |||||||||||||||||| | ||
Sbjct 460 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 519
Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286
|||| || |||||||| |||||||||||| | ||| ||||| |||| | | ||| |
Sbjct 520 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGGGACTCGATG 579
Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335
||||| |||||| ||| | || ||| || | ||| |||||||||
Sbjct 580 ATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACGCGGCCCT 628
>seq278874
Length=770
Score = 100 bits (110), Expect = 3e-15
Identities = 84/103 (82%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234
|||| | ||||||||| ||||| |||||||||||||| || ||||| || || |||||||
Sbjct 343 CGGCCAGGCCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 284
Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277
||||||| ||||| |||| |||||||| || || |||||
Sbjct 283 AGATGCCTTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 241
>seq169471
Length=565
Score = 100 bits (110), Expect = 3e-15
Identities = 97/125 (78%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095
||||||||||||||||| ||| ||||| ||| | |||||||| | |||| |
Sbjct 288 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGCCTCACGCCCACCGAGTTC 229
Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155
|| | ||| || ||||| |||||||||||| |||||||||||||||| |||||||||
Sbjct 228 TTCTTCCACGCCATGGGCGGCCGCGAGGGCCTCATCGACACGGCCGTCAAAACGGCCGAG 169
Query 509156 ACGGG 509160
|| ||
Sbjct 168 ACCGG 164
>seq213966
Length=210
Score = 98.7 bits (108), Expect = 1e-14
Identities = 89/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109
|||||||||||| |||||| ||||||||||| |||| ||| | |||||| ||||||
Sbjct 116 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGGCACCTGGCGCTGCTGTGCGACAC 57
Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161
|||| || ||||||| || ||||| |||| || |||||| ||||||||
Sbjct 56 CATGACCTCCCGCGGACACCTGATGGCCATCACCCGGCACGGCGTCAACCGC 5
>seq82011
Length=15829
Score = 98.7 bits (108), Expect = 1e-14
Identities = 90/114 (79%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889
||||||||| || ||||||| |||||||||||||| |||||||||| ||| | | ||
Sbjct 15140 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 15199
Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943
||| |||| ||||||| ||| || ||| |||||| || |||| ||| || ||
Sbjct 15200 GTACTGGATGGGGAAGATGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 15253
>seq57717
Length=7095
Score = 86.0 bits (94), Expect = 8e-11
Identities = 116/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 1852372 CTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAG 1852431
|||||| || ||||| || ||||| ||| | |||| ||||| |||||| || ||
Sbjct 827 CTGGTAATCAGTGCCCCGGACAAATCTGAGCTTGTCCAGGGGCACCCCGATGCTCTCCAG 768
Query 1852432 CATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGT 1852491
|||||| |||||| | |||||| ||||| || | || | ||| ||||| || |
Sbjct 767 CATGGCTTTGATGACGTGCTCGTAGTAGCGGGTGCGCAGCTCCAGCAGCTCCCAGGGAGC 708
Query 1852492 CTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGAT 1852533
|| |||||| |||| ||||| | ||| |||||||||||
Sbjct 707 TTTCATGTTGTCCAGGTAAGCGTGGAGGTCAGCAAAGAGGAT 666
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6081823886588160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |