Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq192473 120 4e-21 seq278874 100 3e-15 seq169471 100 3e-15 seq213966 98.7 1e-14 seq82011 98.7 1e-14 seq57717 86.0 8e-11 >seq192473 Length=894 Score = 120 bits (132), Expect = 4e-21 Identities = 128/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 ||||||||||||||||||||| || | | || |||||||||||||||||| | || Sbjct 460 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 519 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| || |||||||| |||||||||||| | ||| ||||| |||| | | ||| | Sbjct 520 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGGGACTCGATG 579 Query 1628287 ATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCT 1628335 ||||| |||||| ||| | || ||| || | ||| ||||||||| Sbjct 580 ATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTGCGCACGCGGCCCT 628 >seq278874 Length=770 Score = 100 bits (110), Expect = 3e-15 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1630175 CGGCAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGT 1630234 |||| | ||||||||| ||||| |||||||||||||| || ||||| || || ||||||| Sbjct 343 CGGCCAGGCCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 284 Query 1630235 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA 1630277 ||||||| ||||| |||| |||||||| || || ||||| Sbjct 283 AGATGCCTTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 241 >seq169471 Length=565 Score = 100 bits (110), Expect = 3e-15 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 509036 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 509095 ||||||||||||||||| ||| ||||| ||| | |||||||| | |||| | Sbjct 288 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGCCTCACGCCCACCGAGTTC 229 Query 509096 TTTCTGCACATGATCGGCGGGCGCGAGGGCCTCGTCGACACGGCCGTCAAGACGGCCGAG 509155 || | ||| || ||||| |||||||||||| |||||||||||||||| ||||||||| Sbjct 228 TTCTTCCACGCCATGGGCGGCCGCGAGGGCCTCATCGACACGGCCGTCAAAACGGCCGAG 169 Query 509156 ACGGG 509160 || || Sbjct 168 ACCGG 164 >seq213966 Length=210 Score = 98.7 bits (108), Expect = 1e-14 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| |||||| ||||||||||| |||| ||| | |||||| |||||| Sbjct 116 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGGCACCTGGCGCTGCTGTGCGACAC 57 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| || ||||||| || ||||| |||| || |||||| |||||||| Sbjct 56 CATGACCTCCCGCGGACACCTGATGGCCATCACCCGGCACGGCGTCAACCGC 5 >seq82011 Length=15829 Score = 98.7 bits (108), Expect = 1e-14 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 ||||||||| || ||||||| |||||||||||||| |||||||||| ||| | | || Sbjct 15140 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 15199 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 ||| |||| ||||||| ||| || ||| |||||| || |||| ||| || || Sbjct 15200 GTACTGGATGGGGAAGATGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 15253 >seq57717 Length=7095 Score = 86.0 bits (94), Expect = 8e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 1852372 CTGGTACTCGGTGCCGCGCACAAACTCGAGTCCGCCCAGCGGCACGCCGATGTGCTGGAG 1852431 |||||| || ||||| || ||||| ||| | |||| ||||| |||||| || || Sbjct 827 CTGGTAATCAGTGCCCCGGACAAATCTGAGCTTGTCCAGGGGCACCCCGATGCTCTCCAG 768 Query 1852432 CATGGCCTTGATGGCAAACTCGTACCAGCGGCACCGGTGTTCGACCAGGTCCCACGGCGT 1852491 |||||| |||||| | |||||| ||||| || | || | ||| ||||| || | Sbjct 767 CATGGCTTTGATGACGTGCTCGTAGTAGCGGGTGCGCAGCTCCAGCAGCTCCCAGGGAGC 708 Query 1852492 CTTGCCGTTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGAT 1852533 || |||||| |||| ||||| | ||| ||||||||||| Sbjct 707 TTTCATGTTGTCCAGGTAAGCGTGGAGGTCAGCAAAGAGGAT 666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6081823886588160