Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq82011 105 1e-16 seq192473 102 1e-15 seq278874 96.9 5e-14 seq169471 95.1 2e-13 seq248169 93.3 7e-13 seq213966 87.8 3e-11 >seq82011 Length=15829 Score = 105 bits (116), Expect = 1e-16 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || ||||| ||||||||||||||||| |||||||||| ||| || ||| Sbjct 15141 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 15200 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || |||||||||| | || || || ||||||||| || ||||||||||| Sbjct 15201 TACTGGATGGGGAAGATGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 15253 >seq192473 Length=894 Score = 102 bits (112), Expect = 1e-15 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 |||| |||||||||||||||| || | ||||||||||||||||||||||||| || Sbjct 460 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 519 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 |||| || |||||||| ||||||||||| | || ||||| |||| | | || | Sbjct 520 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGGGACTCGATG 579 Query 2071699 ATGGCCGACCA 2071709 ||||| |||| Sbjct 580 ATGGCGTACCA 590 >seq278874 Length=770 Score = 96.9 bits (106), Expect = 5e-14 Identities = 83/103 (81%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 2073650 CGGCAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGT 2073709 |||| | ||||||||| ||||| | |||||||||||| || |||| ||||| || |||| Sbjct 343 CGGCCAGGCCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 284 Query 2073710 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 ||||||| ||||| |||| |||||||| || ||| ||||| Sbjct 283 AGATGCCTTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 241 >seq169471 Length=565 Score = 95.1 bits (104), Expect = 2e-13 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 431022 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 431081 ||||||||||||||||| ||| ||||| ||| | |||||||| | |||| | Sbjct 288 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGCCTCACGCCCACCGAGTTC 229 Query 431082 TTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAG 431141 || | ||| || ||||| |||||||| ||| |||||||||||||||| ||||||||| Sbjct 228 TTCTTCCACGCCATGGGCGGCCGCGAGGGCCTCATCGACACGGCCGTCAAAACGGCCGAG 169 Query 431142 ACGGG 431146 || || Sbjct 168 ACCGG 164 >seq248169 Length=378 Score = 93.3 bits (102), Expect = 7e-13 Identities = 117/157 (75%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGC-GGTTGAGGCGACGCGCGCCGGCGCTCTC 2070110 ||| | | ||| || |||||||||||| ||| ||||||| | | || ||||||||| Sbjct 192 GCCCCGTAGTAAATGGTCTCAAAGATG-TGCTGGTTGAGCAGCTGGGCCTGGGCGCTCTC 134 Query 2070111 CCACGGCAGGTCCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGG 2070170 | || | ||||| | || ||||||||||||||||||||||||| ||| || || Sbjct 133 GAAGGGGAACCTCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGG 74 Query 2070171 CCGGTGGCGCAGGTTCGAGTGCCGGGCCT-CGGGCAC 2070206 ||||| ||| |||| ||| || ||||| |||| || Sbjct 73 GCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGGGGAC 37 >seq213966 Length=210 Score = 87.8 bits (96), Expect = 3e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 434126 CGTGATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 434185 ||| |||||||| |||||| ||||||||||| |||| ||| | |||||| |||||| Sbjct 116 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGGCACCTGGCGCTGCTGTGCGACAC 57 Query 434186 CATGTGCTGTCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCG 434236 |||| || ||||| || ||||| |||| ||||||||| ||||||| Sbjct 56 CATGACCTCCCGCGGACACCTGATGGCCATCACCCGGCACGGCGTCAACCG 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7883431975422720