Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq82011 105 1e-16
seq192473 102 1e-15
seq278874 96.9 5e-14
seq169471 95.1 2e-13
seq248169 93.3 7e-13
seq213966 87.8 3e-11
>seq82011
Length=15829
Score = 105 bits (116), Expect = 1e-16
Identities = 91/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362
|||||||| || ||||| ||||||||||||||||| |||||||||| ||| || |||
Sbjct 15141 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 15200
Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415
|| |||||||||| | || || || ||||||||| || |||||||||||
Sbjct 15201 TACTGGATGGGGAAGATGACGAACCGGCGGGGGTTCTCCCGCAGCAGCGGCTC 15253
>seq192473
Length=894
Score = 102 bits (112), Expect = 1e-15
Identities = 101/131 (77%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638
|||| |||||||||||||||| || | ||||||||||||||||||||||||| ||
Sbjct 460 ACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 519
Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698
|||| || |||||||| ||||||||||| | || ||||| |||| | | || |
Sbjct 520 CTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGGGACTCGATG 579
Query 2071699 ATGGCCGACCA 2071709
||||| ||||
Sbjct 580 ATGGCGTACCA 590
>seq278874
Length=770
Score = 96.9 bits (106), Expect = 5e-14
Identities = 83/103 (81%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 2073650 CGGCAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGT 2073709
|||| | ||||||||| ||||| | |||||||||||| || |||| ||||| || ||||
Sbjct 343 CGGCCAGGCCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGT 284
Query 2073710 AGATGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752
||||||| ||||| |||| |||||||| || ||| |||||
Sbjct 283 AGATGCCTTCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCA 241
>seq169471
Length=565
Score = 95.1 bits (104), Expect = 2e-13
Identities = 96/125 (77%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 431022 CCCGAGAGCCGCGGCTTTGTGCGCAACTCGTACGAGCGCGGCCTCAACTCGCGCGAGATG 431081
||||||||||||||||| ||| ||||| ||| | |||||||| | |||| |
Sbjct 288 CCCGAGAGCCGCGGCTTCGTGGAGAACTCCTACCTGGCCGGCCTCACGCCCACCGAGTTC 229
Query 431082 TTTCTGCACATGATCGGCGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAG 431141
|| | ||| || ||||| |||||||| ||| |||||||||||||||| |||||||||
Sbjct 228 TTCTTCCACGCCATGGGCGGCCGCGAGGGCCTCATCGACACGGCCGTCAAAACGGCCGAG 169
Query 431142 ACGGG 431146
|| ||
Sbjct 168 ACCGG 164
>seq248169
Length=378
Score = 93.3 bits (102), Expect = 7e-13
Identities = 117/157 (75%), Gaps = 3/157 (2%)
Strand=Plus/Minus
Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGC-GGTTGAGGCGACGCGCGCCGGCGCTCTC 2070110
||| | | ||| || |||||||||||| ||| ||||||| | | || |||||||||
Sbjct 192 GCCCCGTAGTAAATGGTCTCAAAGATG-TGCTGGTTGAGCAGCTGGGCCTGGGCGCTCTC 134
Query 2070111 CCACGGCAGGTCCATCATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGG 2070170
| || | ||||| | || ||||||||||||||||||||||||| ||| || ||
Sbjct 133 GAAGGGGAACCTCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATGCCGATGGG 74
Query 2070171 CCGGTGGCGCAGGTTCGAGTGCCGGGCCT-CGGGCAC 2070206
||||| ||| |||| ||| || ||||| |||| ||
Sbjct 73 GCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGGGGAC 37
>seq213966
Length=210
Score = 87.8 bits (96), Expect = 3e-11
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 434126 CGTGATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 434185
||| |||||||| |||||| ||||||||||| |||| ||| | |||||| ||||||
Sbjct 116 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGGCACCTGGCGCTGCTGTGCGACAC 57
Query 434186 CATGTGCTGTCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCG 434236
|||| || ||||| || ||||| |||| ||||||||| |||||||
Sbjct 56 CATGACCTCCCGCGGACACCTGATGGCCATCACCCGGCACGGCGTCAACCG 6
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7883431975422720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |