Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq18740 138 1e-27
seq303695 98.7 1e-15
>seq18740
Length=6788
Score = 138 bits (152), Expect = 1e-27
Identities = 565/881 (64%), Gaps = 15/881 (2%)
Strand=Plus/Plus
Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179
||| ||||| || || || ||||| || ||| | | ||||| || | || ||
Sbjct 5483 ATCAAACTTATTAGCAAATAGGTGGTGGT--TTCGT-AGCATCCAGTTCAAGTCTCCTAC 5539
Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239
||| || || || || || || | ||| || || ||||| || || || | || || |
Sbjct 5540 TCCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGCGCACCTTT 5599
Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299
| ||| || || || |||| |||||||| || ||||| | | || | |||||| ||
Sbjct 5600 GGACACGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGA 5659
Query 162300 GGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
||||||||||| |||| || | | || || || || | || | |||||| | |
Sbjct 5660 AACGTCGTACTTGT-CACTGGAAGAAAATGCACCTGGGACTTCAGGGATTCTCTGAATTG 5718
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418
| |||||||||| || ||||| || || || || || | |||||| ||||||| | |
Sbjct 5719 TTGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATGAACT---TAA 5775
Query 162419 CCGTTT---TATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGC 162475
||| | | | || | || || || ||| | || | ||| || || |
Sbjct 5776 GTATTTTGCTGTTTTCTAATACATATCCTACAAAGCTTCTGCTAACTACAAAATAGGCAC 5835
Query 162476 TACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTA 162535
| |||||||| || || ||| | || || | | ||||||| || ||||| ||
Sbjct 5836 TGCCAGAAAAAACCGGAGTGCTCAGGGGTGGAAGTTGTTTGTCTATGCCTGTGTTCTTTA 5895
Query 162536 CCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGT 162595
| || || | | | | || ||| ||||||| | ||| ||| | |
Sbjct 5896 TTTTACCATCAATAATCTCATGGTGTTTCTTCCACCTTACTTCTTTATAAATAGGCATTT 5955
Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655
||| || || | ||||| |||| | || || | | ||| || || | |
Sbjct 5956 TTTCTGTTTCCAAGCTGTTTTCACCCTTAAGAGCTTTTAATTTCTCCACTATTTCCTGGT 6015
Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715
||||||| | |||||||| | || || || || || | ||||||||| || ||
Sbjct 6016 TGGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGATATTTCCAGTTTGAACTTC 6075
Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775
|| ||| ||||| | | ||||| | || ||||| || | ||||| || || || |
Sbjct 6076 TTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCATATA 6135
Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835
| || ||||| ||| ||| | ||||||||| || ||||| || ||||| ||| |||
Sbjct 6136 CCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCA 6195
Query 162836 CGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTG 162893
| | ||| | || || | |||| | ||||| || | |||||| | ||||||
Sbjct 6196 CAG-CAGCAAAAAAGGATTCTGGAGACTTT-TTGTCTACATGGATGCAGTAAAAATTCTG 6253
Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953
|| || || || | || || | ||| || | |||||| || || || | ||||| ||
Sbjct 6254 TGGAGCATATATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTAT 6313
Query 162954 AGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994
|| || || || || || || || || || ||||||||
Sbjct 6314 TGAGTAAGCAATTGGAAATTCTGCTTCTTCATTACTGAGAG 6354
>seq303695
Length=2500
Score = 98.7 bits (108), Expect = 1e-15
Identities = 229/341 (67%), Gaps = 6/341 (2%)
Strand=Plus/Plus
Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714
|||||||| | ||| ||||||||||||||| || || | || ||| ||| |
Sbjct 1430 TTGGTCTTGATGGGGAAGTCGGTGCCGCAGGTGTTGATGAGGTAGCGCCATGGCACGGGG 1489
Query 162715 AGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773
|| | | ||| ||||| | ||||| || |||||||| | || ||| | || ||
Sbjct 1490 C-TCTGCAGCAGGTCCTGCATGCAGTTAAGGTCGGCCTGCAGCCGGGACCAGGCGGCATA 1548
Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833
|| |||||||||| | |||| || ||||| ||| ||| || | | | || | |
Sbjct 1549 GACCACGCTCTCCAGGCGGCTGGCCACGAAGACGTTGGGGAAGCAGGCAGCAATGGCTCT 1608
Query 162834 CACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891
||||||| ||| | | || | ||| || || | || || ||||| | ||||
Sbjct 1609 CACGGCCTCCTGGAAGGCGGCCGGG--GATTTGCTGTCCATATGGACACAGTAGACATTC 1666
Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951
|| |||||||||| || || || | | ||| ||||| || || || || || | ||
Sbjct 1667 TGGGGGGCGTAGACGGACCGTAGAAGCCGCTCAAACATGTCGATTTTGTGATGGATGACC 1726
Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAG 162992
|| || || || ||||||||||| ||||||| | |||||
Sbjct 1727 ATGGAGTAGGCGATGGGGAACTCCTCCTCCTCCTGGCTGAG 1767
Score = 84.2 bits (92), Expect = 3e-11
Identities = 233/354 (66%), Gaps = 5/354 (1%)
Strand=Plus/Plus
Query 162060 CAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTC 162119
||||| ||| || || || ||||| || ||||||||||| || |||| ||
Sbjct 841 CAGGGCCTTGTGGCGCAGGTACTCCTCGAGACACTGGACGGCCGCATCGTCCACCTCGGG 900
Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179
||||||||||| || || || || ||| | || || ||||| | || |||
Sbjct 901 GTCGAACTTGTTGGCCAAGAGATGGTGC---TGCTGCAGCATCCAGGGCACGTCGCCCAC 957
Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239
||| | | ||| |||| ||| ||| |||| |||| ||||| || || || |
Sbjct 958 CCCGTAGATGCAGACGGCGCGCTGGTGGCGGCCGGTGCAAGGCGGGTAGGACGCGCCCTT 1017
Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299
| | |||||||| | | |||||||| || | | | | || | |||||| ||
Sbjct 1018 GCTGATGTCCCCCTCCATGAACTGCCACTTGACTAGGCGGGGAAGGGCGTTCATGTCCGA 1077
Query 162300 GGTGTCGTACTTGTACACTG-ACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358
| | |||||||| | ||| | ||| | | || || |||||||||| | | || |
Sbjct 1078 GAGCTGGTACTTGT-CGCTGAAGGGCGTGCCCCCCGGCACACCCGGCATGCGGTTCAGGG 1136
Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACT 162412
| ||||| | ||| ||||| || || || | ||||| |||||||| | |||||
Sbjct 1137 TGGCCCAGACGTGCTCGTCAGGGCTGTAGCTGTCCTTGGACCACTCGAGGAACT 1190
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576201566208000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |