Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq18740 138 1e-27 seq303695 98.7 1e-15 >seq18740 Length=6788 Score = 138 bits (152), Expect = 1e-27 Identities = 565/881 (64%), Gaps = 15/881 (2%) Strand=Plus/Plus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||| ||||| || || || ||||| || ||| | | ||||| || | || || Sbjct 5483 ATCAAACTTATTAGCAAATAGGTGGTGGT--TTCGT-AGCATCCAGTTCAAGTCTCCTAC 5539 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| || || || || || || | ||| || || ||||| || || || | || || | Sbjct 5540 TCCAAAAACACAGACAGAGCGAATGTGAACTCCACTGCATGGTGGGTAGGGCGCACCTTT 5599 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | ||| || || || |||| |||||||| || ||||| | | || | |||||| || Sbjct 5600 GGACACGTCACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGA 5659 Query 162300 GGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 ||||||||||| |||| || | | || || || || | || | |||||| | | Sbjct 5660 AACGTCGTACTTGT-CACTGGAAGAAAATGCACCTGGGACTTCAGGGATTCTCTGAATTG 5718 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | |||||||||| || ||||| || || || || || | |||||| ||||||| | | Sbjct 5719 TTGCCCACAGGTACTCATCTGGGCTGTAAGTATCTTTTGCCCACTCAATGAACT---TAA 5775 Query 162419 CCGTTT---TATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGC 162475 ||| | | | || | || || || ||| | || | ||| || || | Sbjct 5776 GTATTTTGCTGTTTTCTAATACATATCCTACAAAGCTTCTGCTAACTACAAAATAGGCAC 5835 Query 162476 TACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTA 162535 | |||||||| || || ||| | || || | | ||||||| || ||||| || Sbjct 5836 TGCCAGAAAAAACCGGAGTGCTCAGGGGTGGAAGTTGTTTGTCTATGCCTGTGTTCTTTA 5895 Query 162536 CCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGT 162595 | || || | | | | || ||| ||||||| | ||| ||| | | Sbjct 5896 TTTTACCATCAATAATCTCATGGTGTTTCTTCCACCTTACTTCTTTATAAATAGGCATTT 5955 Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 ||| || || | ||||| |||| | || || | | ||| || || | | Sbjct 5956 TTTCTGTTTCCAAGCTGTTTTCACCCTTAAGAGCTTTTAATTTCTCCACTATTTCCTGGT 6015 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 ||||||| | |||||||| | || || || || || | ||||||||| || || Sbjct 6016 TGGTCTTTATAGGAAAGTCCATACCACATAGGTTTATTAGATATTTCCAGTTTGAACTTC 6075 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 || ||| ||||| | | ||||| | || ||||| || | ||||| || || || | Sbjct 6076 TTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCATATA 6135 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835 | || ||||| ||| ||| | ||||||||| || ||||| || ||||| ||| ||| Sbjct 6136 CCACACTCTCTAACTGGCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCA 6195 Query 162836 CGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTG 162893 | | ||| | || || | |||| | ||||| || | |||||| | |||||| Sbjct 6196 CAG-CAGCAAAAAAGGATTCTGGAGACTTT-TTGTCTACATGGATGCAGTAAAAATTCTG 6253 Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953 || || || || | || || | ||| || | |||||| || || || | ||||| || Sbjct 6254 TGGAGCATATATTGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTAT 6313 Query 162954 AGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAG 162994 || || || || || || || || || || |||||||| Sbjct 6314 TGAGTAAGCAATTGGAAATTCTGCTTCTTCATTACTGAGAG 6354 >seq303695 Length=2500 Score = 98.7 bits (108), Expect = 1e-15 Identities = 229/341 (67%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 |||||||| | ||| ||||||||||||||| || || | || ||| ||| | Sbjct 1430 TTGGTCTTGATGGGGAAGTCGGTGCCGCAGGTGTTGATGAGGTAGCGCCATGGCACGGGG 1489 Query 162715 AGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 || | | ||| ||||| | ||||| || |||||||| | || ||| | || || Sbjct 1490 C-TCTGCAGCAGGTCCTGCATGCAGTTAAGGTCGGCCTGCAGCCGGGACCAGGCGGCATA 1548 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 || |||||||||| | |||| || ||||| ||| ||| || | | | || | | Sbjct 1549 GACCACGCTCTCCAGGCGGCTGGCCACGAAGACGTTGGGGAAGCAGGCAGCAATGGCTCT 1608 Query 162834 CACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 ||||||| ||| | | || | ||| || || | || || ||||| | |||| Sbjct 1609 CACGGCCTCCTGGAAGGCGGCCGGG--GATTTGCTGTCCATATGGACACAGTAGACATTC 1666 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 || |||||||||| || || || | | ||| ||||| || || || || || | || Sbjct 1667 TGGGGGGCGTAGACGGACCGTAGAAGCCGCTCAAACATGTCGATTTTGTGATGGATGACC 1726 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAG 162992 || || || || ||||||||||| ||||||| | ||||| Sbjct 1727 ATGGAGTAGGCGATGGGGAACTCCTCCTCCTCCTGGCTGAG 1767 Score = 84.2 bits (92), Expect = 3e-11 Identities = 233/354 (66%), Gaps = 5/354 (1%) Strand=Plus/Plus Query 162060 CAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTC 162119 ||||| ||| || || || ||||| || ||||||||||| || |||| || Sbjct 841 CAGGGCCTTGTGGCGCAGGTACTCCTCGAGACACTGGACGGCCGCATCGTCCACCTCGGG 900 Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||||||||||| || || || || ||| | || || ||||| | || ||| Sbjct 901 GTCGAACTTGTTGGCCAAGAGATGGTGC---TGCTGCAGCATCCAGGGCACGTCGCCCAC 957 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| | | ||| |||| ||| ||| |||| |||| ||||| || || || | Sbjct 958 CCCGTAGATGCAGACGGCGCGCTGGTGGCGGCCGGTGCAAGGCGGGTAGGACGCGCCCTT 1017 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | | |||||||| | | |||||||| || | | | | || | |||||| || Sbjct 1018 GCTGATGTCCCCCTCCATGAACTGCCACTTGACTAGGCGGGGAAGGGCGTTCATGTCCGA 1077 Query 162300 GGTGTCGTACTTGTACACTG-ACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | | |||||||| | ||| | ||| | | || || |||||||||| | | || | Sbjct 1078 GAGCTGGTACTTGT-CGCTGAAGGGCGTGCCCCCCGGCACACCCGGCATGCGGTTCAGGG 1136 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACT 162412 | ||||| | ||| ||||| || || || | ||||| |||||||| | ||||| Sbjct 1137 TGGCCCAGACGTGCTCGTCAGGGCTGTAGCTGTCCTTGGACCACTCGAGGAACT 1190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576201566208000