Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq192473 120 4e-21 seq82011 98.7 1e-14 seq278874 91.5 2e-12 seq169471 91.5 2e-12 >seq192473 Length=894 Score = 120 bits (132), Expect = 4e-21 Identities = 111/138 (80%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| |||||| ||||| ||| | |||| | ||||| ||||| ||||||||| ||||| Sbjct 596 CAGCTCTGGTACGCCATCATCGAGTCCCAGACTGAGACTGGCACCCCCTACATGCTCTAC 537 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAA 262209 |||||| || |||| || ||||||||||||||||||||||||| | || | ||| Sbjct 536 AAGGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCA-AGTGCAGCAA 478 Query 262210 CCTGTGCACCGAGATCGT 262227 |||||||||||||||||| Sbjct 477 CCTGTGCACCGAGATCGT 460 >seq82011 Length=15829 Score = 98.7 bits (108), Expect = 1e-14 Identities = 91/114 (80%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||||| || ||||| ||| || ||| | |||||||||| ||||| Sbjct 15253 GAGCCGCTGCTGCGGGAGAACCCCCGCCGGTTCGTCATCTTCCCCATCCAGTACCACGAC 15194 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | ||||| ||| ||||||||||||||||| ||||| || |||||||| Sbjct 15193 ATCTGGCAGATGTA-CAAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 15141 >seq278874 Length=770 Score = 91.5 bits (100), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| ||| || |||||||| ||| ||||| |||||||| ||||| || |||||| Sbjct 241 TGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTGAAGCAG 300 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCG 260072 || || |||||||||||| | ||||| |||||||| | |||| Sbjct 301 TGTGCCCTCATCTCCAAGTCTGCCGGGGGCATCGGCCTGGCCG 343 >seq169471 Length=565 Score = 91.5 bits (100), Expect = 2e-12 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 1816167 CGGCGGTCTTGACGGCCGTGTCGACCAGGCCCTCGCGGCCGCCGATCATGTGCAAAAACA 1816226 |||| || |||||||||||||||| ||||||||||||||||| || ||| || || | Sbjct 171 CGGCCGTTTTGACGGCCGTGTCGATGAGGCCCTCGCGGCCGCCCATGGCGTGGAAGAAGA 230 Query 1816227 TCTCGCGCGAGTTGAGGCCGCGCTCGTACGAGTTGCGCACAAAGCCGCGGCTCTCGGG 1816284 |||| | |||||||| | ||| ||||| ||| ||||||||||||||||| Sbjct 231 ACTCGGTGGGCGTGAGGCCGGCCAGGTAGGAGTTCTCCACGAAGCCGCGGCTCTCGGG 288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7148057737013760