Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_027016.1
Length=226084
Score E
Sequences producing significant alignments: (Bits) Value
seq43590 116 5e-21
>seq43590
Length=10808
Score = 116 bits (128), Expect = 5e-21
Identities = 199/289 (69%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 214605 AAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTAC 214664
|| ||||| || | |||||||||| | ||||| || ||||| ||| | || || |||
Sbjct 5336 AAAGAGATGGCAGCGGAGCTGGAGGAGCTGTACGGGGACATCGATGCCATGGAGCTGTAC 5395
Query 214665 GCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGAG 214724
| | | || | || || || | |||| |||||| |||| || | | | |||
Sbjct 5396 CCAGGCCTGCTGGTGGAGAAGCCCCGGCCCGGGGCCATCTTCGGCGAGACCATGGTGGAG 5455
Query 214725 TCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTAC 214784
||| || ||||||||||||| ||| || || |||| |||||||||||| | |||
Sbjct 5456 ATGGGTGCGCCGTTCTCCCTGAAGGGGCTGATGGGCAACGCCATCTGCTCCCCCGAGTAC 5515
Query 214785 TGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCTT 214844
||||| | || ||| |||| || | | ||| ||||||| | | || ||||
Sbjct 5516 TGGAAGCCCAGCACCTTCGGGGGCAAGGTTGGCTTCGACATCGTCAACACGGCCTCCCTG 5575
Query 214845 CAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTTAGCCGCATTCC 214893
||| |||||||| | |||||||||||| ||||| || | || ||||
Sbjct 5576 CAGAAGCTCATCTGCAACAACGTCAAGGGCTGTCCCTTCACTGCCTTCC 5624
Score = 111 bits (122), Expect = 2e-19
Identities = 108/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 214092 TGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGA 214151
|||| | ||| |||| || || ||||| || | ||| ||||||||| |||||||||
Sbjct 3557 TGGGGCAGGAGGTGTTCGGCCTGGTGCCGGGGCTGATGATGTACGCCACGATCTGGCTGC 3616
Query 214152 GAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAAC 214211
| ||||||||| | || ||||||||||| || || ||||||| || ||| | ||||| |
Sbjct 3617 GCGAGCACAACCGCGTCTGCGACGTGCTCAAGCACCAGCACCCCGACTGGGATGACGAGC 3676
Query 214212 AGCTGTTCCAGATCACTCG 214230
|||| ||||||| ||| ||
Sbjct 3677 AGCTCTTCCAGACCACCCG 3695
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 720551597875200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |