Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq43590 116 5e-21 >seq43590 Length=10808 Score = 116 bits (128), Expect = 5e-21 Identities = 199/289 (69%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 214605 AAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTAC 214664 || ||||| || | |||||||||| | ||||| || ||||| ||| | || || ||| Sbjct 5336 AAAGAGATGGCAGCGGAGCTGGAGGAGCTGTACGGGGACATCGATGCCATGGAGCTGTAC 5395 Query 214665 GCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGAG 214724 | | | || | || || || | |||| |||||| |||| || | | | ||| Sbjct 5396 CCAGGCCTGCTGGTGGAGAAGCCCCGGCCCGGGGCCATCTTCGGCGAGACCATGGTGGAG 5455 Query 214725 TCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTAC 214784 ||| || ||||||||||||| ||| || || |||| |||||||||||| | ||| Sbjct 5456 ATGGGTGCGCCGTTCTCCCTGAAGGGGCTGATGGGCAACGCCATCTGCTCCCCCGAGTAC 5515 Query 214785 TGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCTT 214844 ||||| | || ||| |||| || | | ||| ||||||| | | || |||| Sbjct 5516 TGGAAGCCCAGCACCTTCGGGGGCAAGGTTGGCTTCGACATCGTCAACACGGCCTCCCTG 5575 Query 214845 CAGTCTCTCATCTGTAGCAACGTCAAGGGATGTCCGTTAGCCGCATTCC 214893 ||| |||||||| | |||||||||||| ||||| || | || |||| Sbjct 5576 CAGAAGCTCATCTGCAACAACGTCAAGGGCTGTCCCTTCACTGCCTTCC 5624 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 214092 TGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGA 214151 |||| | ||| |||| || || ||||| || | ||| ||||||||| ||||||||| Sbjct 3557 TGGGGCAGGAGGTGTTCGGCCTGGTGCCGGGGCTGATGATGTACGCCACGATCTGGCTGC 3616 Query 214152 GAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAAC 214211 | ||||||||| | || ||||||||||| || || ||||||| || ||| | ||||| | Sbjct 3617 GCGAGCACAACCGCGTCTGCGACGTGCTCAAGCACCAGCACCCCGACTGGGATGACGAGC 3676 Query 214212 AGCTGTTCCAGATCACTCG 214230 |||| ||||||| ||| || Sbjct 3677 AGCTCTTCCAGACCACCCG 3695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 720551597875200