Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq192473 93.3 5e-14
seq22071 82.4 1e-10
>seq192473
Length=894
Score = 93.3 bits (102), Expect = 5e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 111257 ACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTA 111316
||| || ||| ||||| |||||||| | || || || || | |||| | |||
Sbjct 430 ACACCCACCTCCTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTG 489
Query 111317 ATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAG 111376
|| || |||| |||| ||||| |||||| ||||||| | ||||||||||||||||||
Sbjct 490 ATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAG 549
Query 111377 GGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417
|| || || ||||| ||||| || | || || || | |||
Sbjct 550 GGGGTGCCAGTCTCAGTCTGGGACTCGATGATGGCGTACCA 590
>seq22071
Length=8576
Score = 82.4 bits (90), Expect = 1e-10
Identities = 94/124 (76%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737
||||||||| | |||||||||||| ||||| | || ||||| || |||| |||||
Sbjct 8419 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 8360
Query 122738 TCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796
||| |||| | ||||| ||| || || || || |||||||| || ||||| |||||
Sbjct 8359 TCAGCCAAAATATAGCAGCA-AAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAG 8301
Query 122797 GCAA 122800
||||
Sbjct 8300 GCAA 8297
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 625610308608000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |