Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq59012 98.7 3e-15 seq181449 93.3 1e-13 seq82011 89.7 2e-12 >seq59012 Length=3606 Score = 98.7 bits (108), Expect = 3e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| || | ||||| ||||||||||| ||||| ||||||| ||||||||||||| Sbjct 2579 ATGCAGTAGTGACTGTCCCAGCCTATTTCAATGACTCCCAGCGCCAGGCAACAAAAGATG 2638 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727 |||| | || || ||| | || || || ||||| || || || ||||| || || || | Sbjct 2639 CTGGAACTATCGCAGGGCTCAACGTCCTGAGAATCATCAACGAGCCCACAGCAGCTGCCA 2698 Query 349728 TTGCATATGGGCTTGATAA 349746 |||| || ||||| || || Sbjct 2699 TTGCCTACGGGCTGGACAA 2717 >seq181449 Length=4937 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 183252 GCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATTCT 183311 || || |||||||||||||| || ||||| |||||||||||||| |||||| || Sbjct 1762 GCCTGGACAGCTGCACCATAGGCCACAGCCTCATCTGGGTTAATACCACGAGAAGGCTCC 1821 Query 183312 TTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCG 183371 || ||||| || || ||| || | || || ||||| || || | ||| || ||||| Sbjct 1822 TTCCCATTGAAGAACTCTTTAACGAGCTGCTGGATTTTGGGGATGCGAGTCGATCCACCA 1881 Query 183372 ACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCA 183431 || | || | ||||| |||| | || | | | ||||||| | |||||| | | Sbjct 1882 ACCAGGACAATCTCATCAATATCAGACTTCTTCAGGTCAGAATCTTCCAGAACTTTCTGA 1941 Query 183432 ACAGGGTCCATAGT 183445 ||||| | |||||| Sbjct 1942 ACAGGCTTCATAGT 1955 Score = 86.0 bits (94), Expect = 2e-11 Identities = 123/173 (71%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| || || || || || ||| || ||| || || || || Sbjct 2630 ACAGCTGCTGCCATTGCTTACGGACTGGACAA---GAGAGAGGGAGAGAAGAACATCCTC 2574 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | || || | || ||||| || |||||||| || || || ||| |||| | ||| | Sbjct 2573 GTATTCGACCTGGGCGGTGGAACCTTTGATGTGTCCCTCCTCACAATTGACAACGGAGTC 2514 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || ||| ||||||||| || | ||||||||||| ||||| Sbjct 2513 TTTGAAGTTGTGGCTACTAATGGTGATACTCACTTGGGTGGAGAAGACTTTGA 2461 >seq82011 Length=15829 Score = 89.7 bits (98), Expect = 2e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||||||||| || | |||||| ||||| || | |||||||||||| ||||| | Sbjct 12610 ATACCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 12669 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 | |||| |||||| |||| ||||| || ||||| || || ||||| || |||| Sbjct 12670 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAA 12729 Query 223839 ACGCTACTA 223847 | ||||||| Sbjct 12730 AGGCTACTA 12738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509265508509440