Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq59012 98.7 3e-15
seq181449 93.3 1e-13
seq82011 89.7 2e-12
>seq59012
Length=3606
Score = 98.7 bits (108), Expect = 3e-15
Identities = 105/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667
|||| || | ||||| ||||||||||| ||||| ||||||| |||||||||||||
Sbjct 2579 ATGCAGTAGTGACTGTCCCAGCCTATTTCAATGACTCCCAGCGCCAGGCAACAAAAGATG 2638
Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAA 349727
|||| | || || ||| | || || || ||||| || || || ||||| || || || |
Sbjct 2639 CTGGAACTATCGCAGGGCTCAACGTCCTGAGAATCATCAACGAGCCCACAGCAGCTGCCA 2698
Query 349728 TTGCATATGGGCTTGATAA 349746
|||| || ||||| || ||
Sbjct 2699 TTGCCTACGGGCTGGACAA 2717
>seq181449
Length=4937
Score = 93.3 bits (102), Expect = 1e-13
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 183252 GCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATTCT 183311
|| || |||||||||||||| || ||||| |||||||||||||| |||||| ||
Sbjct 1762 GCCTGGACAGCTGCACCATAGGCCACAGCCTCATCTGGGTTAATACCACGAGAAGGCTCC 1821
Query 183312 TTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCG 183371
|| ||||| || || ||| || | || || ||||| || || | ||| || |||||
Sbjct 1822 TTCCCATTGAAGAACTCTTTAACGAGCTGCTGGATTTTGGGGATGCGAGTCGATCCACCA 1881
Query 183372 ACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCA 183431
|| | || | ||||| |||| | || | | | ||||||| | |||||| | |
Sbjct 1882 ACCAGGACAATCTCATCAATATCAGACTTCTTCAGGTCAGAATCTTCCAGAACTTTCTGA 1941
Query 183432 ACAGGGTCCATAGT 183445
||||| | ||||||
Sbjct 1942 ACAGGCTTCATAGT 1955
Score = 86.0 bits (94), Expect = 2e-11
Identities = 123/173 (71%), Gaps = 3/173 (2%)
Strand=Plus/Minus
Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774
|| ||||| || ||||| || || || || || ||| || ||| || || || ||
Sbjct 2630 ACAGCTGCTGCCATTGCTTACGGACTGGACAA---GAGAGAGGGAGAGAAGAACATCCTC 2574
Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834
| || || | || ||||| || |||||||| || || || ||| |||| | ||| |
Sbjct 2573 GTATTCGACCTGGGCGGTGGAACCTTTGATGTGTCCCTCCTCACAATTGACAACGGAGTC 2514
Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887
||||||||| || ||| ||||||||| || | ||||||||||| |||||
Sbjct 2513 TTTGAAGTTGTGGCTACTAATGGTGATACTCACTTGGGTGGAGAAGACTTTGA 2461
>seq82011
Length=15829
Score = 89.7 bits (98), Expect = 2e-12
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778
|| |||||||||| || | |||||| ||||| || | |||||||||||| ||||| |
Sbjct 12610 ATACCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 12669
Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838
| |||| |||||| |||| ||||| || ||||| || || ||||| || ||||
Sbjct 12670 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAA 12729
Query 223839 ACGCTACTA 223847
| |||||||
Sbjct 12730 AGGCTACTA 12738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1509265508509440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |