Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq302870 93.3 3e-14 >seq302870 Length=2297 Score = 93.3 bits (102), Expect = 3e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||| || ||||||||||| ||||| || || || ||||| || || ||||| Sbjct 609 CCCGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACT 550 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTA-TTTTGTGACAC 111896 ||||| ||||| ||||| || || ||||| || || || || | || | || || || Sbjct 549 CCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTCAGA-AC 491 Query 111897 ATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 ||| || || ||||| |||| || |||||||| |||||| Sbjct 490 ATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATC 451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 390472041322240