Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq278874 91.5 2e-13
seq192473 91.5 2e-13
seq248169 84.2 2e-11
>seq278874
Length=770
Score = 91.5 bits (100), Expect = 2e-13
Identities = 79/98 (81%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 79654 CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCC 79713
||||||||||||| ||||||||||| | || |||| ||| || || |||||||||||
Sbjct 335 CCGATGCCCCCGGCAGACTTGGAGATGAGGGCACACTGCTTCAGGGTGTCGTAGATGCCT 276
Query 79714 TCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751
||||| |||||||||||| | ||||||||||||
Sbjct 275 TCGATGCTGTCGTCCTTCATGCACAGCAGGAAGCAGCT 238
Score = 87.8 bits (96), Expect = 2e-12
Identities = 78/98 (80%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312
||||| ||||| || |||||||| |||||||| || ||||||||||| || || |||
Sbjct 238 AGCTGCTTCCTGCTGTGCATGAAGGACGACAGCATCGAAGGCATCTACGACACCCTGAAG 297
Query 19313 GAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350
|||| || | ||||||||||| ||||||| |||||
Sbjct 298 CAGTGTGCCCTCATCTCCAAGTCTGCCGGGGGCATCGG 335
>seq192473
Length=894
Score = 91.5 bits (100), Expect = 2e-13
Identities = 109/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157
||| | ||| || ||||||| || ||||||||||||| | ||||| |||||||||
Sbjct 456 CTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCT 515
Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTT 79217
|||| ||| |||| |||||||||| |||||| || || || |||||| ||| ||
Sbjct 516 CTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGGGACTC 575
Query 79218 GAGAACGCCGTCCCAGATGTCCCGGGCC 79245
|| | | ||| ||||| | | |||||
Sbjct 576 GATGATGGCGTACCAGAGCTGCTGGGCC 603
>seq248169
Length=378
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 20089 GCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGG 20148
||| ||||| || |||| |||||||| |||||||||||||||| ||||| || | |
Sbjct 64 GCGGCACCGCCCCATCGGCATCGGCGTGCAGGGCCTGGCCGACGCCTTCATCCTGATGAG 123
Query 20149 CCTCTCATTCGACGATC-CCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGT 20207
|| | ||||| || | || |||| | ||||||| || |||||| ||| || | |
Sbjct 124 GTTCCCCTTCGA-GAGCGCCCAGGCCCAGCTGCTCAACCAGCACATCTTTGAGACCATTT 182
Query 20208 ACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGT 20267
|| ||| |||||| || || || || |||| ||| | ||||| ||||| || |
Sbjct 183 ACTACGGGGCCCTGGAGGCCAGCTGTGAGCTGGCCAGGGAGCAGGGCCCCTACGACACCT 242
Query 20268 TCAAGGGGTCGCC 20280
| |||| || ||
Sbjct 243 ACCAGGGCTCTCC 255
Score = 82.4 bits (90), Expect = 8e-11
Identities = 143/204 (70%), Gaps = 8/204 (4%)
Strand=Plus/Minus
Query 78722 CCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT---GACT 78778
|||| || |||| | | || ||||| | |||| |||| |||| || || || | ||
Sbjct 257 CCGGAGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTGGCCT 198
Query 78779 CGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGG 78838
| ||||||| ||| ||| | | ||| |||||| || ||||||| | |||| ||
Sbjct 197 C---CAGGGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAGCAGCTGGGCCTGGG 141
Query 78839 T-CTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATA 78897
||| ||||| | | | | || |||||| | |||||||||||||| ||||||||
Sbjct 140 CGCTC-TCGAAGGGGAACCTCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATG 82
Query 78898 GCGATCGGTCGGTGGCGCATGTTG 78921
|||| || ||||| ||| ||||
Sbjct 81 CCGATGGGGCGGTGCCGCCGGTTG 58
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546409688371200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |