Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq248169 127 2e-24 >seq248169 Length=378 Score = 127 bits (140), Expect = 2e-24 Identities = 163/221 (74%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 80573 CCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC---GACT 80629 ||||||| ||| | | || ||||| ||||||| | | ||||||||||||| | || Sbjct 257 CCGGAGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGGCCAGCTCACAGCTGGCCT 198 Query 80630 CCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGC-GCGCCTGT 80688 ||| ||||| ||| |||||| |||||||| | || ||| | | || | ||||| Sbjct 197 CCA---GGGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGAG-CAGCTGGGCCTGG 142 Query 80689 GGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATG 80748 | | ||||| | || | ||||| ||||| |||| ||||||||||| ||||||||| Sbjct 141 GCGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCGGCCAGGCCCTGCACGCCGATG 82 Query 80749 GCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGG 80789 |||| |||||||| ||| ||| || |||||||||| ||| Sbjct 81 CCGATGGGGCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGG 41 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568111283097600