Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq303695 264 1e-65 >seq303695 Length=2500 Score = 264 bits (292), Expect = 1e-65 Identities = 668/1003 (67%), Gaps = 22/1003 (2%) Strand=Plus/Minus Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGG- 13658 |||| || || ||| |||| || ||| |||||| |||||| ||| ||| || | Sbjct 1841 CGCCCGGCGAGTACCTGAATATTACGAGGGACTGCAGAGCCTTCAAGAA-GACGCGGCGC 1783 Query 13659 TATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTG 13718 || ||| | || || |||| ||| |||| ||||| |||||||||||||| || || Sbjct 1782 TACATCGAGTTTCCGCTCAGCCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGGTC 1723 Query 13719 ATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAAC 13778 ||||| ||||| ||||| ||||| ||||| || || || || |||||||||| ||||| Sbjct 1722 ATCCATCACAAAATCGACATGTTTGAGCGGCTTCTACGGTCCGTCTACGCCCCCCAGAAT 1663 Query 13779 CTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCC 13838 ||||||| ||||| ||||| ||| ||| | || ||| || ||| ||| Sbjct 1662 GTCTACTGTGTCCATATGGACAGCAAATCCCCGGCCGCCTTCCAGGAGGCCGTGAGAGCC 1603 Query 13839 ATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGC 13898 || || |||||||| ||||| | ||||| ||| ||| | |||||| || | | Sbjct 1602 ATTGCTGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAGAGCGTGGTCTATGCC 1543 Query 13899 TCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTC 13958 ||||| || ||||||||||||| | ||||||| ||||||| |||||| Sbjct 1542 GCCTGGTCCCGGCTGCAGGCCGACCTTAACTGCATGCAGGACCTGCTGCAGAGCCCCGTG 1483 Query 13959 AAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAG 14018 ||| | ||||| ||||| ||||| | |||||||| ||||||||||| ||| Sbjct 1482 CCATGGCGCTACCTCATCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAG 1423 Query 14019 ATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCATGC 14076 || || ||| ||||| || ||| ||| | ||| | ||||| | || | | | | Sbjct 1422 ATAGTCCGGACGCTGCAGCTGCTGCAGGGCCACAACAACGTGGAGTCGGTGAAGCCCTCC 1363 Query 14077 CCAACCACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGG 14136 | | ||| ||| ||| | | ||| ||||| ||| | Sbjct 1362 GCGGC--GAAGGAGCAGCGCTGGCTGTACCACTACGAGGTGG-----GGCAGACCATCTC 1310 Query 14137 TCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACG 14196 || ||| | | ||| || ||||| || | ||| |||||| || |||| | || Sbjct 1309 TC-GCACTGCCCAGAAGAAACTGCCGCCACCCCACAGCTACCCCATGTTCACGGGCAGCG 1251 Query 14197 CTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCC 14256 | ||| | |||| ||||| || ||| | | |||| || || || || ||| | Sbjct 1250 CGTACAACACATTCACACGGGACTTTGTGCAGTACGTCTTCGAGAAC---CCCACGGCAC 1194 Query 14257 ---TGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCG 14313 | || | | |||| | |||||| |||||||| ||||||||| | ||||||||| Sbjct 1193 AGAAGTTCCTCGAGTGGTCCAAGGACAGCTACAGCCCTGACGAGCACGTCTGGGCCACCC 1134 Query 14314 TGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCG 14372 || | | ||| |||| |||||||| | || |||| || ||||||| | |||| Sbjct 1133 TGAACCGCATG-CCGGGTGTGCCGGGGGGCACGCCCTTCAGCGACAAGTACCAGCTCTCG 1075 Query 14373 GACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAA 14432 |||||| ||| | | | ||||||||||| | | |||||||| |||| || Sbjct 1074 GACATGAACGCCCTTCCCCGCCTAGTCAAGTGGCAGTTCATGGAGGGGGACATCAGCAAG 1015 Query 14433 GGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCC 14492 || || |||||||||||| |||| |||| | |||| ||||||||| |||| Sbjct 1014 GGCGCGTCCTACCCGCCTTGCACCGGCCGCCACCAGCGCGCCGTCTGCATCTACGGGGTG 955 Query 14493 GGCGACGTGAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGA 14551 ||||||||| ||| || | ||| | | || || || ||||||||||||||| ||| Sbjct 954 GGCGACGTGCCCTGGATGCTGCAGCAGCAC-CATCTCTTGGCCAACAAGTTCGACCCCGA 896 Query 14552 GACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594 | |||||| ||||| | ||||| || ||| || ||||| Sbjct 895 GGTGGACGATGCGGCCGTCCAGTGTCTCGAGGAGTACCTGCGC 853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656199101644800