Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_028379.1
Length=205896
Score E
Sequences producing significant alignments: (Bits) Value
seq303695 264 1e-65
>seq303695
Length=2500
Score = 264 bits (292), Expect = 1e-65
Identities = 668/1003 (67%), Gaps = 22/1003 (2%)
Strand=Plus/Minus
Query 13600 CGCCGGGAGACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGG- 13658
|||| || || ||| |||| || ||| |||||| |||||| ||| ||| || |
Sbjct 1841 CGCCCGGCGAGTACCTGAATATTACGAGGGACTGCAGAGCCTTCAAGAA-GACGCGGCGC 1783
Query 13659 TATCTCGTGAGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTG 13718
|| ||| | || || |||| ||| |||| ||||| |||||||||||||| || ||
Sbjct 1782 TACATCGAGTTTCCGCTCAGCCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGGTC 1723
Query 13719 ATCCACCACAAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAAC 13778
||||| ||||| ||||| ||||| ||||| || || || || |||||||||| |||||
Sbjct 1722 ATCCATCACAAAATCGACATGTTTGAGCGGCTTCTACGGTCCGTCTACGCCCCCCAGAAT 1663
Query 13779 CTCTACTGCGTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCC 13838
||||||| ||||| ||||| ||| ||| | || ||| || ||| |||
Sbjct 1662 GTCTACTGTGTCCATATGGACAGCAAATCCCCGGCCGCCTTCCAGGAGGCCGTGAGAGCC 1603
Query 13839 ATCGCCAGGTGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGC 13898
|| || |||||||| ||||| | ||||| ||| ||| | |||||| || | |
Sbjct 1602 ATTGCTGCCTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAGAGCGTGGTCTATGCC 1543
Query 13899 TCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTC 13958
||||| || ||||||||||||| | ||||||| ||||||| ||||||
Sbjct 1542 GCCTGGTCCCGGCTGCAGGCCGACCTTAACTGCATGCAGGACCTGCTGCAGAGCCCCGTG 1483
Query 13959 AAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAG 14018
||| | ||||| ||||| ||||| | |||||||| ||||||||||| |||
Sbjct 1482 CCATGGCGCTACCTCATCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAG 1423
Query 14019 ATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAG--AGCGAGGGCATGC 14076
|| || ||| ||||| || ||| ||| | ||| | ||||| | || | | | |
Sbjct 1422 ATAGTCCGGACGCTGCAGCTGCTGCAGGGCCACAACAACGTGGAGTCGGTGAAGCCCTCC 1363
Query 14077 CCAACCACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGG 14136
| | ||| ||| ||| | | ||| ||||| ||| |
Sbjct 1362 GCGGC--GAAGGAGCAGCGCTGGCTGTACCACTACGAGGTGG-----GGCAGACCATCTC 1310
Query 14137 TCAACACCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACG 14196
|| ||| | | ||| || ||||| || | ||| |||||| || |||| | ||
Sbjct 1309 TC-GCACTGCCCAGAAGAAACTGCCGCCACCCCACAGCTACCCCATGTTCACGGGCAGCG 1251
Query 14197 CTTACTTTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCC 14256
| ||| | |||| ||||| || ||| | | |||| || || || || ||| |
Sbjct 1250 CGTACAACACATTCACACGGGACTTTGTGCAGTACGTCTTCGAGAAC---CCCACGGCAC 1194
Query 14257 ---TGCTCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCG 14313
| || | | |||| | |||||| |||||||| ||||||||| | |||||||||
Sbjct 1193 AGAAGTTCCTCGAGTGGTCCAAGGACAGCTACAGCCCTGACGAGCACGTCTGGGCCACCC 1134
Query 14314 TGCAGAGAATGTACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCG 14372
|| | | ||| |||| |||||||| | || |||| || ||||||| | ||||
Sbjct 1133 TGAACCGCATG-CCGGGTGTGCCGGGGGGCACGCCCTTCAGCGACAAGTACCAGCTCTCG 1075
Query 14373 GACATGTGGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAA 14432
|||||| ||| | | | ||||||||||| | | |||||||| |||| ||
Sbjct 1074 GACATGAACGCCCTTCCCCGCCTAGTCAAGTGGCAGTTCATGGAGGGGGACATCAGCAAG 1015
Query 14433 GGGGCCCTGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCC 14492
|| || |||||||||||| |||| |||| | |||| ||||||||| ||||
Sbjct 1014 GGCGCGTCCTACCCGCCTTGCACCGGCCGCCACCAGCGCGCCGTCTGCATCTACGGGGTG 955
Query 14493 GGCGACGTGAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGA 14551
||||||||| ||| || | ||| | | || || || ||||||||||||||| |||
Sbjct 954 GGCGACGTGCCCTGGATGCTGCAGCAGCAC-CATCTCTTGGCCAACAAGTTCGACCCCGA 896
Query 14552 GACGGACGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCGC 14594
| |||||| ||||| | ||||| || ||| || |||||
Sbjct 895 GGTGGACGATGCGGCCGTCCAGTGTCTCGAGGAGTACCTGCGC 853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 656199101644800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |