Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq302870 136 4e-27
seq154869 95.1 1e-14
>seq302870
Length=2297
Score = 136 bits (150), Expect = 4e-27
Identities = 129/165 (78%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTG 34633
|||||||| | || |||||||| |||| ||||| ||||| || |||||| || ||
Sbjct 449 CTGATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTATGTTCTGAATGGTGAATTG 508
Query 34634 TCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCT 34693
|| ||||| |||||||| | || ||||||||||| |||| ||||| ||||| |||||
Sbjct 509 TCTTGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTCAATATTGCC 568
Query 34694 AGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTG 34738
|| || | ||||||||||||||||| || |||||| |||| ||
Sbjct 569 AGCTATTCACTGCTCACGTACATGATTGCCCATGTCACGGGGCTG 613
Score = 136 bits (150), Expect = 4e-27
Identities = 129/165 (78%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 6607 CAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGG 6666
|| |||| |||||| || ||||||||||||||||| | || || ||||| ||||| ||
Sbjct 613 CAGCCCCGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTGAAAGG 554
Query 6667 CACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC 6726
||| |||| ||||||||||| || | |||||||| ||||| |||| || ||||||
Sbjct 553 CACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTCAG 494
Query 6727 GACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAG 6771
|| ||||| ||||| |||| |||||||| || | ||||||||
Sbjct 493 AACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAG 449
>seq154869
Length=4943
Score = 95.1 bits (104), Expect = 1e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361
|||| |||||||| | ||||||||||| ||||| ||| | ||||| || || || |
Sbjct 4292 CCAAAGAGCTCTCTGCAAAAGGGGTGAAGATTTGGGATGCTAATGGGTCCCGTGAGTTCC 4351
Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421
|||| |||| ||| ||| | | |||||||| || ||||| || || || || ||||
Sbjct 4352 TGGATAAGCAGGGTTTCAGCACCAGAGAGGAGGGTGATTTGGGACCAGTGTATGGTTTCC 4411
Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446
||||||| || ||||| || || ||
Sbjct 4412 AGTGGAGGCATTTTGGAGCAGAATA 4436
Score = 95.1 bits (104), Expect = 1e-14
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || || ||||| || ||||||||||| || || || || ||||| || ||||||||
Sbjct 4436 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCT 4377
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
| | ||| ||| |||| ||||| || || || ||||| | ||| ||||| ||||||
Sbjct 4376 CTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGGGACCCATTAGCATCCCAAATCTTC 4317
Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043
||||| | |||||||| ||||
Sbjct 4316 ACCCCTTTTGCAGAGAGCTCTTTGG 4292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 446533900185600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |