Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq146695 113 4e-20
seq302870 84.2 2e-11
>seq146695
Length=37120
Score = 113 bits (124), Expect = 4e-20
Identities = 109/140 (78%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || |||||||||||||| ||||| |||||||| | || || || ||||| |||
Sbjct 35537 GTGGTGGAAGAGCTCTTCCGAGACGGGGTTAACTGGGGCAGAATCGTGGCCTTCTTCGAG 35478
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
||||| ||||| ||||| ||||| |||||||| | | || | ||||||| |||| |
Sbjct 35477 TTTGGCGGTGTGATGTGCGTGGAGAGCGTCAACCGGGAGATGTCTCCCCTCGTGGACAGC 35418
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| || || |||||||| ||
Sbjct 35417 ATCGCTGCCTGGATGACCGA 35398
>seq302870
Length=2297
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
||||| || | || ||||||||||| || | || |||||||| | ||| |||||
Sbjct 612 AGCCCCGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 553
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
|| || || ||||||||| | || ||||| || | ||||||||| | || || || |
Sbjct 552 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTCAGA 493
Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694
||||| ||||| | | | || || ||||||| | ||||
Sbjct 492 ACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCAT 452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412918533022720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |