Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq302870 125 6e-24
seq154869 111 1e-19
seq307243 87.8 1e-12
>seq302870
Length=2297
Score = 125 bits (138), Expect = 6e-24
Identities = 126/164 (77%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
||||| ||||| || || |||||||||||||| || || |||||||| || || || |||
Sbjct 612 AGCCCCGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 553
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| || || |||||||| || |||||||| ||||| ||||| || | || || |
Sbjct 552 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTCAGA 493
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877
|| || ||||| || | ||||||||||||||| | ||||| ||
Sbjct 492 ACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAG 449
>seq154869
Length=4943
Score = 111 bits (122), Expect = 1e-19
Identities = 125/162 (77%), Gaps = 4/162 (2%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG-TGCTCGAA 30075
||||||||||||||||| || ||||| ||||||| || ||||| || ||| |||| |||
Sbjct 4424 AAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCTCTGGTGCT-GAA 4366
Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135
||| ||| |||| || || | ||| || || || ||||| ||||| ||||| || |
Sbjct 4365 ACCCTGCTTATCCAGGAACTCACGGGACCCATTAGCATCCCAAATCTTCACCCCTTTTGC 4306
Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAG 30177
||||||||||||| ||||| || || || || || |||||
Sbjct 4305 AGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAACACAG 4266
>seq307243
Length=4399
Score = 87.8 bits (96), Expect = 1e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| |||||||||||||| || | || | |||||| | | ||| | ||||| || ||
Sbjct 2480 TTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCAGGA 2539
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||| || |||||||||||||||| | ||||| ||||||
Sbjct 2540 ATGGAGAACCACGTTTTTCTACCCATTATCAGTGCATTCTGTTTACCT 2587
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404636188833280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |