Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq154869 123 2e-23 seq302870 122 6e-23 >seq154869 Length=4943 Score = 123 bits (136), Expect = 2e-23 Identities = 141/184 (77%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| |||||||| ||||||||||| ||||| || ||||| ||||||| || Sbjct 4446 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATC 4387 Query 27549 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 ||||| || ||| |||| ||| ||| ||| |||| || || | ||| || || || | Sbjct 4386 ACCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGGGACCCATTAGCAT 4328 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 27667 |||| ||||| ||||| || | ||||||||||||| ||||| || || || || || | Sbjct 4327 CCCAAATCTTCACCCCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 4270 Query 27668 ACAG 27671 |||| Sbjct 4269 ACAG 4266 >seq302870 Length=2297 Score = 122 bits (134), Expect = 6e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 ||||| ||||| || || |||||||||||||| || || |||||||| || || || || Sbjct 612 AGCCCCGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 553 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || |||||||| ||||| || || || | || |||| Sbjct 552 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTCAGA 493 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 || || ||||| || | ||| ||||||||||| | |||||| ||| Sbjct 492 ACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAGG 448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368118000730880