Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_030842.1
Length=115510
Score E
Sequences producing significant alignments: (Bits) Value
seq154869 123 2e-23
seq302870 122 6e-23
>seq154869
Length=4943
Score = 123 bits (136), Expect = 2e-23
Identities = 141/184 (77%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548
||| || |||| |||||||| ||||||||||| ||||| || ||||| ||||||| ||
Sbjct 4446 CATATCTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATC 4387
Query 27549 TCCCTCTTCCCTG-TGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607
||||| || ||| |||| ||| ||| ||| |||| || || | ||| || || || |
Sbjct 4386 ACCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGGGACCCATTAGCAT 4328
Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 27667
|||| ||||| ||||| || | ||||||||||||| ||||| || || || || || |
Sbjct 4327 CCCAAATCTTCACCCCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ACAAAAC 4270
Query 27668 ACAG 27671
||||
Sbjct 4269 ACAG 4266
>seq302870
Length=2297
Score = 122 bits (134), Expect = 6e-23
Identities = 126/165 (76%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267
||||| ||||| || || |||||||||||||| || || |||||||| || || || ||
Sbjct 612 AGCCCCGTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 553
Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327
|| || || |||||||| || |||||||| ||||| || || || | || ||||
Sbjct 552 ACTCCTAGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTCAGA 493
Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372
|| || ||||| || | ||| ||||||||||| | |||||| |||
Sbjct 492 ACATAGAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCATCAGG 448
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 368118000730880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |