Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq82011 104 3e-17
seq22071 102 1e-16
seq192473 86.0 9e-12
>seq82011
Length=15829
Score = 104 bits (114), Expect = 3e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
||||||||||| || | ||| |||||||| ||||| |||||||||| ||| | || ||
Sbjct 12615 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 12674
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
|||||||| || | || ||||| ||||||||||| || ||||| || || || || ||
Sbjct 12675 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAGGCT 12734
Query 46774 AC 46775
||
Sbjct 12735 AC 12736
Score = 91.5 bits (100), Expect = 2e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 46324 GACATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCT 46383
||||| |||||||| | || ||||||||||| || ||||| || ||||| || ||||||
Sbjct 11400 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTTGTCTTGCCT 11459
Query 46384 TCCAATGATATATTTTCCATAAAATCAAACGGATT 46418
|||| || || |||||||| || ||||| |||||
Sbjct 11460 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 11494
>seq22071
Length=8576
Score = 102 bits (112), Expect = 1e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713
|||||||| ||||| | ||| || || || || | |||||||| || || | ||| ||
Sbjct 8417 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCTTC 8358
Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773
|||||||||||||| || || || || |||||||| |||||||| || || || || ||
Sbjct 8357 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCA 8298
Query 46774 ACAAGTCTCTCTCC 46787
|| | |||||| ||
Sbjct 8297 ACCACTCTCTCACC 8284
>seq192473
Length=894
Score = 86.0 bits (94), Expect = 9e-12
Identities = 97/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG 76387
||||| ||||| || || || |||||||| || || || || || ||||||||||| ||
Sbjct 463 ATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 522
Query 76388 TTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATA 76447
|| || |||||||| || || | | || || ||||| ||| |||| || ||||| ||
Sbjct 523 TTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGGGACTCGATGATG 582
Query 76448 GATTTCCAGA 76457
| | |||||
Sbjct 583 GCGTACCAGA 592
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 710185324953600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |