Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016-
06-02] 308,480 sequences; 997,399,373 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq43590 206 4e-48
seq304265 102 1e-16
>seq43590
Length=10808
Score = 206 bits (228), Expect = 4e-48
Identities = 224/297 (75%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348
|||| || | || ||||| |||||||||||| | |||| || ||| | | ||
Sbjct 5624 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 5565
Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408
| |||||||| |||| || || | || |||||||||||||||||||||||| | ||||
Sbjct 5564 TGTTGACGATGTCGAAGCCAACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 5505
Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468
|||||||| |||| |||| || || || ||||||||||| || |||| ||| | |||
Sbjct 5504 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGCGCACCCATCTCCACCATGG 5445
Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528
|||| ||||||||||| ||| |||||||| ||||||| | || | |||||||||||
Sbjct 5444 TCTCGCCGAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 5385
Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585
|| |||| ||| ||||| || || || || || || ||||| ||||||||||
Sbjct 5384 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 5328
Score = 140 bits (154), Expect = 5e-28
Identities = 176/242 (73%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303
||||| || ||||||||||| || ||||||||| ||| || || || | || || ||
Sbjct 3701 ATGAGCCGGGTGGTCTGGAAGAGCTGCTCGTCATCCCAGTCGGGGTGCTGGTGCTTGAGC 3642
Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363
|| ||||| || | |||||| || | |||||||| |||||||||||||| ||||| ||
Sbjct 3641 ACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATCAGCCCCGGC 3582
Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423
|||||||| || |||| || || || | | ||| || |||||||| | ||| ||
Sbjct 3581 ACCAGGCCGAACACCTCCTGCCCCACGGAGAACTGCAGGTGCTCGGGCACGTGGGGCGGG 3522
Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483
|| | ||| | |||| ||| |||| || || |||||||| || || ||||||
Sbjct 3521 TACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGCGGGTACATTTCTCCATCGATCATC 3462
Query 9484 TG 9485
||
Sbjct 3461 TG 3460
Score = 86.0 bits (94), Expect = 9e-12
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
|||||||| || || | || ||||| || || | || || || || | |||| |
Sbjct 1825 TCACCTTTAACACCCATTGGTGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTG 1766
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
|| ||||| |||||||| |||||||||||||| ||| |||||| |||||| |
Sbjct 1765 TAGTAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTGTAGTCACTGTTGTAAGTT 1706
Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059
|| |||||||||||||| | ||||| ||||
Sbjct 1705 GGTGGGCTGTCAATCAAGTGTGATCTTGCTGA 1674
>seq304265
Length=2654
Score = 102 bits (112), Expect = 1e-16
Identities = 208/309 (67%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336
|||| || || ||||||| | |||| ||| ||| || ||| || || || ||
Sbjct 545 CATCCGGCACGTGGAACGCTACGTACGGGCACTTCTTCACATTGAGGCACACGAGCTTCT 604
Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396
| | ||| |||| || ||| | || || | |||| || ||||| ||||| ||||
Sbjct 605 CCAGGGATGCTGTCTTAACAATCTCAAAGCCAGCTGCTCCACCAAAGGTACTGGGTTTCC 664
Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456
||||| | |||||||||||| ||| | | || || || ||||| || ||||| || |
Sbjct 665 AGTACTCTGGGGAGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGA 724
Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516
||| | || || || || || ||| | ||||| |||| || || | || || || |
Sbjct 725 TCTCCACCATACTTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCGAGCAGTAAGCCTG 784
Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576
||| | ||||| ||| || | |||||| || | | || || || || |||| |
Sbjct 785 GGTAAAACTCCAGAGCATCAATGTCTCCATACAACTCTTCCAGCTCTGCTGCCTTCTCTT 844
Query 8577 TTTCTCCTG 8585
||||||||
Sbjct 845 CTTCTCCTG 853
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 714112523059200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |