Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20plumbeitarsus_20[genbank_20GCA_5F001655115.1_202016- 06-02] 308,480 sequences; 997,399,373 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq43590 206 4e-48 seq304265 102 1e-16 >seq43590 Length=10808 Score = 206 bits (228), Expect = 4e-48 Identities = 224/297 (75%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| |||||||||||| | |||| || ||| | | || Sbjct 5624 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 5565 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||||||| |||| || || | || |||||||||||||||||||||||| | |||| Sbjct 5564 TGTTGACGATGTCGAAGCCAACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 5505 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| |||| |||| || || || ||||||||||| || |||| ||| | ||| Sbjct 5504 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGCGCACCCATCTCCACCATGG 5445 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| ||||||||||| ||| |||||||| ||||||| | || | ||||||||||| Sbjct 5444 TCTCGCCGAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 5385 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || |||| ||| ||||| || || || || || || ||||| |||||||||| Sbjct 5384 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 5328 Score = 140 bits (154), Expect = 5e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || ||||||||||| || ||||||||| ||| || || || | || || || Sbjct 3701 ATGAGCCGGGTGGTCTGGAAGAGCTGCTCGTCATCCCAGTCGGGGTGCTGGTGCTTGAGC 3642 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 || ||||| || | |||||| || | |||||||| |||||||||||||| ||||| || Sbjct 3641 ACGTCGCAGACGCGGTTGTGCTCGCGCAGCCAGATCGTGGCGTACATCATCAGCCCCGGC 3582 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||||||| || |||| || || || | | ||| || |||||||| | ||| || Sbjct 3581 ACCAGGCCGAACACCTCCTGCCCCACGGAGAACTGCAGGTGCTCGGGCACGTGGGGCGGG 3522 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 || | ||| | |||| ||| |||| || || |||||||| || || |||||| Sbjct 3521 TACAGCATCTCTGCCTGCGTGTCCCGCACCGTCGGCGGGTACATTTCTCCATCGATCATC 3462 Query 9484 TG 9485 || Sbjct 3461 TG 3460 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | || ||||| || || | || || || || | |||| | Sbjct 1825 TCACCTTTAACACCCATTGGTGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTG 1766 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||| |||||||| |||||||||||||| ||| |||||| |||||| | Sbjct 1765 TAGTAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTGTAGTCACTGTTGTAAGTT 1706 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || |||||||||||||| | ||||| |||| Sbjct 1705 GGTGGGCTGTCAATCAAGTGTGATCTTGCTGA 1674 >seq304265 Length=2654 Score = 102 bits (112), Expect = 1e-16 Identities = 208/309 (67%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| || || ||||||| | |||| ||| ||| || ||| || || || || Sbjct 545 CATCCGGCACGTGGAACGCTACGTACGGGCACTTCTTCACATTGAGGCACACGAGCTTCT 604 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 | | ||| |||| || ||| | || || | |||| || ||||| ||||| |||| Sbjct 605 CCAGGGATGCTGTCTTAACAATCTCAAAGCCAGCTGCTCCACCAAAGGTACTGGGTTTCC 664 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| | |||||||||||| ||| | | || || || ||||| || ||||| || | Sbjct 665 AGTACTCTGGGGAGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGA 724 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 ||| | || || || || || ||| | ||||| |||| || || | || || || | Sbjct 725 TCTCCACCATACTTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCGAGCAGTAAGCCTG 784 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576 ||| | ||||| ||| || | |||||| || | | || || || || |||| | Sbjct 785 GGTAAAACTCCAGAGCATCAATGTCTCCATACAACTCTTCCAGCTCTGCTGCCTTCTCTT 844 Query 8577 TTTCTCCTG 8585 |||||||| Sbjct 845 CTTCTCCTG 853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714112523059200