Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq91998 89.7 1e-12
seq13016 89.7 1e-12
seq47029 86.0 1e-11
>seq91998
Length=1234
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 1164 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1105
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 1104 CCCACGTTGGGC 1093
>seq13016
Length=838
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct 184 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 243
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 244 CCCACGTTGGGC 255
>seq47029
Length=58824
Score = 86.0 bits (94), Expect = 1e-11
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 165707 CTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCG 165766
||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||
Sbjct 58658 CTTGCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 58717
Query 165767 AGCCCCACGATGGGC 165781
||||||||| | |||
Sbjct 58718 AGCCCCACGTTTGGC 58732
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1055674367751150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |