Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq67249 127 1e-24
seq102076 102 6e-17
>seq67249
Length=4427
Score = 127 bits (140), Expect = 1e-24
Identities = 101/120 (84%), Gaps = 1/120 (1%)
Strand=Plus/Minus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| || ||| ||||||| |||| |||||||||| |||||||||| ||||||||||||||
Sbjct 1854 CTTGAGCTCCCTGCTGAGCACAATATTAATTCTGTCTTTTAAAGGACGGTTCTTCTCAGG 1795
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTGGTACAGAAGA 4409
||| |||||||| || ||| ||||||| |||| | |||||||||| || | |||| |||
Sbjct 1794 AATGGAGAACCACGTTTTTCTACCCATTATCAGTGCATTCTGTTTACCT-GAACAGGAGA 1736
>seq102076
Length=9597
Score = 102 bits (112), Expect = 6e-17
Identities = 112/149 (75%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092
|||| ||||||||||| |||||||||||||| || |||||||| ||||| | ||| || |
Sbjct 7672 CTTTGTATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCT 7731
Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152
| |||||| ||||| | ||||| | || | ||| ||||| ||||||||||
Sbjct 7732 CCTCTCTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGAGACCCATTAGCATCCCAAA 7791
Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTG 102181
| | ||| || ||| || |||||||||
Sbjct 7792 TCTTCACCCCTTTTGCAGAGAGCTCTTTG 7820
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 360552901994855
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |