Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq36611 111 2e-19 seq17341 111 2e-19 seq109629 86.0 7e-12 seq145217 82.4 9e-11 seq33192 82.4 9e-11 >seq36611 Length=16847 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 2969 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 2910 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||||| || || ||||| || ||||||||||| |||||||| || || ||||||| Sbjct 2909 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAGG 2850 Query 24277 C 24277 | Sbjct 2849 C 2849 >seq17341 Length=11243 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 768 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 827 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 828 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 887 Query 24277 CAATAAGTCTTTCTCC 24292 ||| | ||| || || Sbjct 888 CAACCACTCTCTCACC 903 >seq109629 Length=3266 Score = 86.0 bits (94), Expect = 7e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 ||||| ||||| ||||||||||| ||||| || || | || || || |||| || || Sbjct 957 CACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTG 1016 Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 || || || ||||| ||||| || || || |||||| | | || || | |||||||| Sbjct 1017 CTCTTCCTTCCCTGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTCCAAGTGCCACGG 1076 Query 54148 TTCCAAGTATATGGTCATAACTCCAGG 54174 |||| ||| |||| | | | ||||| Sbjct 1077 CTCCAGGTAGATGGCAAAAGCCCCAGG 1103 >seq145217 Length=433 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||| || || || ||| || | || || || || ||||| | Sbjct 404 TCCAGCCGTAGAAGTGCATGCTGGTCAGCTTGCCGTAGTTGGGCTCGGCGATGTGGATGT 345 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| || || || || ||||||||||| || |||||||| ||||| || | ||| || | Sbjct 344 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCTGCCATCTTCAGGATGGTTT 285 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA 53022 | || | || ||||| | ||| || || Sbjct 284 TCTGGGAGATCTCCCACACAGTCTTGTA 257 >seq33192 Length=1908 Score = 82.4 bits (90), Expect = 9e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 53759 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 53818 ||||| ||||| || || || ||||||||||| || | || || || || ||||| || Sbjct 1561 ATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTG 1620 Query 53819 TTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATC 53878 || || | ||||| || || ||| | || || ||||| ||| ||||||| || || || Sbjct 1621 TTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGGGACTCGATGATG 1680 Query 53879 GCTTTCCAGA 53888 || | ||||| Sbjct 1681 GCGTACCAGA 1690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592544509820400