Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq118025 123 3e-23 seq126002 100 3e-16 >seq118025 Length=4916 Score = 123 bits (136), Expect = 3e-23 Identities = 169/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 83119 GGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCA 83178 |||| |||||||| || | | |||||||||||||||||| || | ||| |||||||| Sbjct 4576 GGGCACGCCGTCAGGGCCAATGAGGAACTTCTCGAAGTTCCAAGCGATGTCATTGCGGCA 4635 Query 83179 CACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGG 83238 || || |||||| ||| ||| |||| | ||| |||| | ||| ||| || Sbjct 4636 GACCGGGGACCAGATGATGTACTGCGGGTTGGTCATCAGCGAGGAGGGGTCATCGTGCGG 4695 Query 83239 CGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTC 83298 ||||| |||||| ||||| | |||||| || ||||| | ||||| ||||| Sbjct 4696 GAAGGGCAGTGCCTCTTTCAGGAAAGTGAAGAGGGGGTGTGCGTTCTTCCCGTTCACCTC 4755 Query 83299 GCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354 |||||||||||| | || || || |||| | | || || |||||||| |||| || Sbjct 4756 GCACTTCTCGAACATTATGAAATTGGGCTTGTACCCCTTGCCAGGACGAACGTTCT 4811 >seq126002 Length=7712 Score = 100 bits (110), Expect = 3e-16 Identities = 116/154 (75%), Gaps = 3/154 (2%) Strand=Plus/Minus Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447 || |||||| || ||||||||||| ||||| || ||||| ||||||| ||| | || Sbjct 4621 TTACCTGGTATCCAAACTGGTTACAGGGGAAGCCCAGCACGACCAGCCGCCGGG--GGTA 4564 Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507 ||| || |||| ||| | ||| ||||| ||||| |||||| | |||||||| || | Sbjct 4563 -GCGGGCTTGGAGCTGGTTGAGCTGGGTGTAATCCCGCACCGTGGTGCCTCAGAGTGAAG 4505 Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAA 83541 | |||||||| || || | || |||||||| || Sbjct 4504 CCACGTTCTCAATCAGGACCACGCGGCCCCGGAA 4471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607589822294200