Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq65683 131 1e-25
>seq65683
Length=849
Score = 131 bits (144), Expect = 1e-25
Identities = 168/232 (72%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006
|||| |||||||| | ||||||| |||| |||||| || || || ||||| ||||| |
Sbjct 87 TTCCACCTCGCAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGG 146
Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066
|||||| | |||| |||||||| ||||| || |||| || |||||||| || |
Sbjct 147 ACAGGGTACGACCGTCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCAGGAG 206
Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126
| | |||||||||||| |||||| || || | | | || || | |||||||
Sbjct 207 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCA 266
Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178
|| | ||| ||||||||||| || | || ||||| || || ||||||||
Sbjct 267 CCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTT 318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421442973626180
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |