Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_001987.1
Length=108409
Score E
Sequences producing significant alignments: (Bits) Value
seq102076 95.1 8e-15
>seq102076
Length=9597
Score = 95.1 bits (104), Expect = 8e-15
Identities = 110/148 (74%), Gaps = 8/148 (5%)
Strand=Plus/Plus
Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461
||||||||||||||||||||||| ||||| ||||| || ||||| | || || || |||
Sbjct 7677 TATTCTGCTCCAAAATGCCTCCACTGGAAACCATACACTGGTCCCAAATCACCCTCCTCT 7736
Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCT----AGATCCATTTGCATCCCAAAT 97517
|| | |||||| ||||||| |||| || ||| ||||| |||||||||||
Sbjct 7737 CTGGTGCTGAAACCCTGCTTATC----CAGGAACTCACGAGACCCATTAGCATCCCAAAT 7792
Query 97518 GTGCACACCAGATGCTGCAAGCTCTTTG 97545
| ||| || ||| | |||||||||
Sbjct 7793 CTTCACCCCTTTTGCAGAGAGCTCTTTG 7820
Score = 86.0 bits (94), Expect = 4e-12
Identities = 114/156 (73%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 97117 GTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCT 97176
||||||||||| ||||| | || | || |||||||| ||||| || |||||||| |||
Sbjct 4079 GTGACATGGGCAATCATGTACGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACTCCT 4138
Query 97177 AGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCA-TCACACACATA 97235
|||||||| || | || || ||||| | || || || | | ||| ||| | |||||
Sbjct 4139 AGTCCCATGTCTCCAGACCTCTGATAGAGTTGGCAAGACAATTCACCATTCAGA-ACATA 4197
Query 97236 AAACTGACTCAATACATGACAGGGGGGCAACGCCAT 97271
||||| | | |||| || || ||||| |||||
Sbjct 4198 GAACTGGCAAAGGGCATGGCACGGAGGCAAAGCCAT 4233
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346113667069850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |