Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq9546 351 7e-92 seq77623 86.0 4e-12 >seq9546 Length=11392 Score = 351 bits (388), Expect = 7e-92 Identities = 649/947 (69%), Gaps = 14/947 (1%) Strand=Plus/Plus Query 107683 AGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATG 107742 |||| || || || | || ||| || |||||||| |||||||| ||||| ||||| Sbjct 101 AGTTTCCGCTCAGCCAGGAGGAGGAGGAGTTCCCCATCGCCTACTCCATGGTCATCCATC 160 Query 107743 AGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACT 107802 | || || || | ||||| ||||| || || |||| || ||||| |||||| | |||| Sbjct 161 ACAAAATCGACATGTTTGAGCGGCTTCTACGGTCCGTCTACGCCCCCCAGAACGTCTACT 220 Query 107803 GTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTT 107862 ||||||| |||| || ||||| | | ||| | ||||| || | |||||| | Sbjct 221 GTGTCCATATGGACAGCAAATCCCCGGCCGCCTTCCAGGAGGCTGTGAGAGCCATTGCTG 280 Query 107863 CCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGT 107922 ||||||||||||| |||||| ||||||| ||| ||||| |||||| |||||| Sbjct 281 CCTGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAAAGCGTGGTCTATGCCGCCTGGT 340 Query 107923 CCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGA 107982 || | |||| || ||||| ||||| ||| | ||| |||| |||||| | ||||||||| Sbjct 341 CCCGGCTGCAGGCCGACCTTAACTGCATGCAGGACCTGCTGCAGAGCCCCGTGCCATGGC 400 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 ||| | | || || ||||| || ||||||||||| |||||||| |||||||| |||| Sbjct 401 GCTACCTCATCAACACCTGCGGCACCGACTTCCCCATCAAGACCAACGCCGAGATAGTCC 460 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCa 108102 | | || || || || |||| | |||| ||||||| | | || || | | | | Sbjct 461 GGACGCTGCAGCTGCTGCAGGGCCACAACAACGTGGAGTCGGTGAAGCCCTCCGCGGCGA 520 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAGGT--GACAGACACACTGTACCCTACCAGCAA 108160 | | | |||||| |||| ||| ||||| | ||||| || | | | || | | Sbjct 521 AGGAGCAGCGCTGGCTGTACCACTACGAGGTGGGGCAGAC-CA-TCTCTCGCACTGCCCA 578 Query 108161 GATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGC 108220 || ||| || || || | | | ||||||||||| || | || || Sbjct 579 GAAGAAACTGCCGCCACCCCACAGCTACCCCATGTTCACGGGCAGCGCGTACAACACATT 638 Query 108221 CTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATG 108280 | | || | |||||| || | ||||| || ||||| | | || | | | || || Sbjct 639 CACACGGGACTTTGTGCAGTACGTCTTCGAGAACCCCACGGCACAGAAGTTCCTCGAGTG 698 Query 108281 GGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTG 108340 | ||| |||| ||| ||||| ||||| ||| ||||||||||||| | || ||| | Sbjct 699 GTCCAAGGACAGCTACAGCCCTGACGAGCACGTCTGGGCCACCCTGAACCGCATGCCGGG 758 Query 108341 GATGCCTGG-----CTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCC 108395 |||| || | | ||| ||| | |||||| || |||| ||||||| ||| Sbjct 759 TGTGCCGGGGGGCACGCCCTTC--AGCGA---CAAGTACCAGCTCTCGGACATGAACGCC 813 Query 108396 ATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTAT 108455 | || | || ||||||||||||| | ||||| || |||||| ||| ||| | || Sbjct 814 CTTCCCCGCCTAGTCAAGTGGCAGTTCATGGAGGGGGACATCAGCAAGGGCGCGTCCTAC 873 Query 108456 GCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTAC 108515 | || ||| | || ||| | | | ||| ||||||| ||||||| || ||| || | Sbjct 874 CCGCCTTGCACCGGCCGCCACCAGCGCGCCGTCTGCATCTACGGGGTGGGCGACGTGCCC 933 Query 108516 TGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAAC 108575 ||||| || ||| | || || |||||||| |||||||| ||||| |||||| ||| Sbjct 934 TGGATGCTGCAGCAGCACCATCTCTTGGCCAACAAGTTCGACCCCGAGGTGGACGATGCG 993 Query 108576 GTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGG 108622 | | | ||||| | || |||||||| || || |||||| | || || Sbjct 994 GCCGTCCAGTGTCTCGAGGAGTACCTGCGCCACAAGGCCCTGTACGG 1040 >seq77623 Length=24705 Score = 86.0 bits (94), Expect = 4e-12 Identities = 227/343 (66%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || ||||| ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 17055 CCTCTCAGTAATGAAGAAGCAGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAA 16996 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || || || | | || || || ||||| | ||||| || Sbjct 16995 ATTGAGATGCTTGATAGACTTCTAAGATCAATATACGCTCCACAGAATTTTTACTGCATC 16936 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||| ||||| | || | || || |||| || | || || Sbjct 16935 CATGTAGACAAAAAGTCTCCAGAATCCTTTTTTGCTGCTGTGAAGGGAATAGTCTCATGT 16876 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | ||||| ||||| || ||| |||| Sbjct 16875 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTGGTATATGCTTCATGGAGCAGA 16816 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| |||| | || |||| ||| | | ||||| | Sbjct 16815 GTGCAGGCAGACATTAACTGCATGAAAGATCT-CTACAGAAGA-AGTTCAAACTGGAAAT 16758 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || | || ||| || | ||||| || ||||||||||| Sbjct 16757 ATCTAATAAACCTATGTGGTATGGACTTTCCTATAAAGACCAA 16715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347595596953770