Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq102076 118 8e-22 >seq102076 Length=9597 Score = 118 bits (130), Expect = 8e-22 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 20401 ATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCG 20460 |||||||||||||| || ||| || ||||| || || ||| ||| ||||||||| Sbjct 4233 ATGGCTTTGCCTCCGTGCCATGCCCTTTGCCAGTTCTATGTTCTGAATGGTGAATTGTCT 4174 Query 20461 TGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGT 20520 || ||| | ||||| | || | || |||||||| || || |||||||||||||| || Sbjct 4173 TGCCAACTCTATCAGAGGTCTGGAGACATGGGACTAGGAGTGCCTTTCAATATTGCCAGC 4114 Query 20521 TATGCGCTGCTTACGTATATGATTGCACATGTTAC 20555 ||| | ||||| ||||| |||||||| ||||| || Sbjct 4113 TATTCACTGCTCACGTACATGATTGCCCATGTCAC 4079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398412377951725