Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq109629 84.2 5e-11 >seq109629 Length=3266 Score = 84.2 bits (92), Expect = 5e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| ||||| | ||| |||| || || ||||||| ||||| || || || Sbjct 2969 CAGCACATGCTGATGAGGGTGTCTGTGGGCATCCACAAGGCCGACATCGACGCCGCCATC 2910 Query 248953 GAGACGTACACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAAC 249012 ||||| |||| | || || |||||| | ||||| ||| | || |||||||||||| Sbjct 2909 GAGACCTACAACCTGCTGTCCGAGCGCTGGTTCACACACGCCTCGCCCACGCTCTTCAAC 2850 Query 249013 GCCGGTACC 249021 ||||| ||| Sbjct 2849 GCCGGCACC 2841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071584370776640