Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq17341 114 2e-20
seq36611 111 2e-19
seq107891 109 7e-19
seq109629 86.0 8e-12
>seq17341
Length=11243
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| |
Sbjct 768 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 827
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||||||||| | ||||| || || |||||||| || ||||| ||||| |||||||
Sbjct 828 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 887
Query 36300 CAATAAGTCTCTCTCC 36315
||| | |||||| ||
Sbjct 888 CAACCACTCTCTCACC 903
>seq36611
Length=16847
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || |
Sbjct 2969 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 2910
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| |||||||| || || ||||| || ||||||||||| |||||||| || || |||||||
Sbjct 2909 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAGG 2850
Query 36300 C 36300
|
Sbjct 2849 C 2849
>seq107891
Length=3116
Score = 109 bits (120), Expect = 7e-19
Identities = 99/125 (79%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 9469 TAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAG 9528
|||||| | |||||||||| ||| ||||| |||||||||||||| | ||||||||||
Sbjct 1510 TAACAACATACCCTGCTCCAAATTTGCTGAAGTCTCTCTTTGATTGCAAGGTATATGCAG 1569
Query 9529 TCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCAT 9588
||| ||||||| || |||||||| || || || ||||||| || || |||||||
Sbjct 1570 TCAATCCAAGAAATACAGCAGTAGTAAGAATAAAGGCTTGCAAGACAACGGAGACATCAT 1629
Query 9589 AGAAA 9593
|||||
Sbjct 1630 AGAAA 1634
>seq109629
Length=3266
Score = 86.0 bits (94), Expect = 8e-12
Identities = 107/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 66059 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATG 66118
||||| ||||| ||||||||||| ||||| || || | || | || |||| || ||
Sbjct 957 CACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTG 1016
Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178
|| || || ||||| ||||| || || || |||||| | | || || | ||||||||
Sbjct 1017 CTCTTCCTTCCCTGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTCCAAGTGCCACGG 1076
Query 66179 TTCCAAGTATATGGCCATAACTCCAGG 66205
|||| ||| ||||| | | | |||||
Sbjct 1077 CTCCAGGTAGATGGCAAAAGCCCCAGG 1103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 656867931288200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |