Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq17341 129 8e-25
seq36611 120 4e-22
seq109629 91.5 2e-13
seq145217 87.8 3e-12
>seq17341
Length=11243
Score = 129 bits (142), Expect = 8e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| ||||| ||||| ||||| ||||| || || | ||| ||||| ||||| | ||| |
Sbjct 768 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 827
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| ||||||||||| | ||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 828 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 887
Query 50102 CAACAAGTCTCTCTCC 50117
|||| | |||||| ||
Sbjct 888 CAACCACTCTCTCACC 903
>seq36611
Length=16847
Score = 120 bits (132), Expect = 4e-22
Identities = 101/124 (81%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041
|||| |||||||| || ||||| || ||||| |||||||| ||||||| || | || |
Sbjct 2969 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 2910
Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101
| |||||||| || || ||||| || |||||||||||||||||||| || || |||||||
Sbjct 2909 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAGG 2850
Query 50102 CAAC 50105
| ||
Sbjct 2849 CTAC 2846
>seq109629
Length=3266
Score = 91.5 bits (100), Expect = 2e-13
Identities = 109/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998
|||| ||||| ||||||||||| ||||| || || | || || || |||| || |||
Sbjct 958 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTGC 1017
Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058
|| || || ||||| ||||| || || || |||||| | | || || | ||||||||
Sbjct 1018 TCTTCCTTCCCTGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 1077
Query 80059 TCCAAGTATATGGCCATAACTCCCGGTC 80086
|||| ||| ||||| | | | || ||||
Sbjct 1078 TCCAGGTAGATGGCAAAAGCCCCAGGTC 1105
>seq145217
Length=433
Score = 87.8 bits (96), Expect = 3e-12
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844
|||| |||||||| ||||| || || || ||| || | || || || || ||||| |
Sbjct 404 TCCAGCCGTAGAAGTGCATGCTGGTCAGCTTGCCGTAGTTGGGCTCGGCGATGTGGATGT 345
Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904
||| || || || || ||||||||||| || |||||||| ||||| || | ||| || |
Sbjct 344 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCTGCCATCTTCAGGATGGTTT 285
Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATA 78932
| || | || ||||| | ||| || ||
Sbjct 284 TCTGGGAGATCTCCCACACAGTCTTGTA 257
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716844787212200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |