Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq17341 129 8e-25
seq36611 120 4e-22
seq145217 96.9 5e-15
seq109629 89.7 7e-13
seq148859 87.8 2e-12
>seq17341
Length=11243
Score = 129 bits (142), Expect = 8e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| ||||| | ||| ||||| || || | ||| ||||| ||||| | ||| |
Sbjct 768 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 827
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||||||||||| ||||| || || ||||||||||| ||||| ||||| |||||||
Sbjct 828 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 887
Query 42207 CAATAAGTCTCTCTCC 42222
||| | |||||| ||
Sbjct 888 CAACCACTCTCTCACC 903
>seq36611
Length=16847
Score = 120 bits (132), Expect = 4e-22
Identities = 99/121 (82%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
||||||||||||| || | ||| || ||||| |||||||| ||||||| || | || |
Sbjct 2969 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 2910
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| |||||||| || || ||||| || |||||||||||||||||||| || || |||||||
Sbjct 2909 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAGG 2850
Query 42207 C 42207
|
Sbjct 2849 C 2849
Score = 86.0 bits (94), Expect = 8e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818
||||| |||||||| | || |||||||| || || || || || ||||| ||||| |||
Sbjct 4182 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTTGTCTTGCCT 4123
Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATT 41853
|||| || || ||||||||||| ||||| |||||
Sbjct 4122 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 4088
Score = 84.2 bits (92), Expect = 3e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 42317 TCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTT 42376
|| ||| ||| |||| || || || || | |||||| |||||||||||||| || |||
Sbjct 1306 TCTTTAGAATCCTTAATGTAAGTGTCAATAAGAAGACTGTACATTTCTGAATGTATATTT 1247
Query 42377 TCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430
|| ||||| ||||| || || |||||||| | || || || | |||||||||
Sbjct 1246 TCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 1193
>seq145217
Length=433
Score = 96.9 bits (106), Expect = 5e-15
Identities = 110/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927
|||| ||||| || ||||| || || || ||| ||| | || ||||| ||||| || |
Sbjct 404 TCCAGCCGTAGAAGTGCATGCTGGTCAGCTTGCCGTAGTTGGGCTCGGCGATGTGGATGT 345
Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987
||| ||||| || || ||||||||||| || |||||||| ||||| || | ||| || |
Sbjct 344 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCTGCCATCTTCAGGATGGTTT 285
Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATA 71015
| || | || ||||| | ||| || ||
Sbjct 284 TCTGGGAGATCTCCCACACAGTCTTGTA 257
>seq109629
Length=3266
Score = 89.7 bits (98), Expect = 7e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
|||| ||||| ||||||||||| ||||| || || | || || || |||| || |||
Sbjct 958 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTGC 1017
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|| || || ||||| ||||| || || || |||||| | | || || | ||||||||
Sbjct 1018 TCTTCCTTCCCTGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 1077
Query 72142 TCCAAGTATATGGC 72155
|||| ||| |||||
Sbjct 1078 TCCAGGTAGATGGC 1091
>seq148859
Length=564
Score = 87.8 bits (96), Expect = 2e-12
Identities = 119/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820
|||| || | || || || |||||||| || || || ||||| || | |||||| || |
Sbjct 317 CACTGAAGACCTTCTTGGTCTCCTTGTGCAGGTTGGAGACGGCGATGCGGGCGGCCAGGA 258
Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880
|||| || || || || | || || ||||| || | ||||| |||||||||||||
Sbjct 257 TGGCGTAGTCGGGGTGCTTGGTGGTCAGCGTGGCCGCCGTCTCTGCGGCCAGAGTGTCCA 198
Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926
|| ||||| || || || | || | || ||||| ||||||||
Sbjct 197 GCTCCACCGTGGTGACCCCGCTGTACAGCCCCTGGATCACCTTCAT 152
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 669808624589800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |