Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq33192 84.2 3e-11 seq17341 84.2 3e-11 >seq33192 Length=1908 Score = 84.2 bits (92), Expect = 3e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 97209 GAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGC 97268 |||||||| || || ||||| ||||||||||| || || | || |||||||| | Sbjct 1661 GAGACTGGCACCCCCTACATGCTCTACAAGGACTCCTGCAACAGGAAGAGCAACCAGCAG 1602 Query 97269 CACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 || |||||||||||||| || ||| |||||||| || || || |||||| || Sbjct 1601 AACCTGGGCACCATCAAGTGCAGCAACCTGTGCACCGAGATCGTGGAGTACACC 1548 >seq17341 Length=11243 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 125421 GACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCC 125480 || ||| |||| || || || || || || |||||||||||||||||| ||||| || Sbjct 900 GAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCT 841 Query 125481 ATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 || |||||||| |||||| | || || ||||| ||| |||| Sbjct 840 ATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGAC 800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739590003819800