Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq65683 168 2e-36
seq12429 168 2e-36
seq17341 116 9e-21
seq36611 102 2e-16
seq118851 91.5 3e-13
>seq65683
Length=849
Score = 168 bits (186), Expect = 2e-36
Identities = 177/233 (76%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| |||| || | || || | || | || ||||||||||| || || |||||
Sbjct 86 ATTCCACCTCGCAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCG 145
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | ||||||||| || || || ||||| ||||| |||||||| |||||||||
Sbjct 146 GACAGGGTACGACCGTCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCAGGA 205
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || || || ||||| || || |||||||| | ||| ||||| || ||
Sbjct 206 GGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCC 265
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
||||| || || || ||||| || || || || || || || |||||||||||
Sbjct 266 ACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTT 318
>seq12429
Length=24911
Score = 168 bits (186), Expect = 2e-36
Identities = 135/163 (83%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547
|| ||||||||||||||| ||||||||||||| ||||| | ||||| | |||||||||
Sbjct 21274 GCTTTATGGTGGTATTATGTCTCTAAAGGAATTGAATATTTGGATACAGTATTCTTCATC 21333
Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607
|| | ||||||||||| ||||||||||| || ||||| ||||| ||||| || |||||
Sbjct 21334 CTGAGGAAGAAATTTAACCAAATTAGTTTCCTTCATGTCTATCACCATTTCACCATGTTC 21393
Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
|| ||| | ||||| |||||||| ||| | ||||| |||||||
Sbjct 21394 ACCTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 21436
>seq17341
Length=11243
Score = 116 bits (128), Expect = 9e-21
Identities = 99/122 (81%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197
||||| ||||| || || ||||| || ||||||||||| || ||||| ||||| ||||||
Sbjct 891 GTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCTGCTATATTTTGG 832
Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257
||||||| || ||||| ||||| ||||| |||||||| || ||| | || ||||| ||
Sbjct 831 CTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTTATTAGCAGAGAT 772
Query 269258 GA 269259
||
Sbjct 771 GA 770
>seq36611
Length=16847
Score = 102 bits (112), Expect = 2e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|||||| | |||| || ||||| || || ||||| || |||||||| || ||||||||
Sbjct 2834 GGAGAACGCGTAGTAGCCTTTGCAGCCGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 2893
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
| || |||||| ||||||||||||| | ||||| ||| | ||||| ||||| ||| |
Sbjct 2894 TCAATTTTTTGGCTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTC 2953
Query 269246 ATAAGCAGGGACGA 269259
|| || || || ||
Sbjct 2954 ATCAGTAGAGATGA 2967
Score = 93.3 bits (102), Expect = 1e-13
Identities = 94/121 (78%), Gaps = 1/121 (1%)
Strand=Plus/Plus
Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955
||||| | ||| |||| ||||||| ||||| || | ||||| | ||||| || || |
Sbjct 1171 TCTAGGTGGAGCGGTTCAGTCAAGAAGTACAAATCACAGAAGCTCGTTGTTTCTATGGCT 1230
Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015
||||||| || || |||||||| |||||||| ||||||||||| | || || ||||| |
Sbjct 1231 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTTATTGACACTTACA 1290
Query 269016 T 269016
|
Sbjct 1291 T 1291
>seq118851
Length=33501
Score = 91.5 bits (100), Expect = 3e-13
Identities = 177/259 (68%), Gaps = 8/259 (3%)
Strand=Plus/Minus
Query 174073 CAGTAAATATTCTAAACGAATTATACTACAATTAAGTATTGAATGTGAAACTTGTGGAAC 174132
|||| |||| || | ||| ||||||||||| | ||| |||||| | ||||| ||||||
Sbjct 5828 CAGTGAATACTCCACACGGATTATACTACAGTCAAGGATTGAAGGAGAAACAGGTGGAAT 5769
Query 174133 TTTCAGCTGTTTATTATTCCAAATTTCAATATTACCAG----GAAGTAGTTGCTTTCCAC 174188
|||||||||||| |||||| |||| | || |||| ||| | || | ||||
Sbjct 5768 TTTCAGCTGTTTGCCATTCCAGGTTTCTGTTTTGCCAGATGACAAGGA-TTCC---CCAC 5713
Query 174189 GCGATGAGGTAATAAGGTTTCTAACTTTCTTTATGTTTCTATCAGTATAAAATGTCTGTA 174248
|| || || ||| | | | |||| ||| || || | | | |||||||| ||||
Sbjct 5712 GCAGGTTGGCAACAAGCTGTTTGACTTCCTTCATTTTCCCTTTGGCATAAAATGCCTGTG 5653
Query 174249 TTTGGTAGATACAGACATTAGGCATTACTGCACGAGATGAATTATTTTCAATTTCTGCAA 174308
||||||| || | || |||| || |||| || || || ||||| || ||||
Sbjct 5652 TTTGGTAAATGGCTGCCTTTGGCACCACCACACGGGAAGAGCAGTTCTCAATCTCAGCAA 5593
Query 174309 CTATCCTAACGTATTCACC 174327
|||| || |||||||
Sbjct 5592 ATATCTGAATTGATTCACC 5574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1149058612727340
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |