Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq44322 179 5e-40
seq84412 116 5e-21
seq124118 87.8 3e-12
>seq44322
Length=22867
Score = 179 bits (198), Expect = 5e-40
Identities = 218/297 (73%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
|||| || | || ||||| || ||||||||| | |||| || ||| | | ||
Sbjct 1449 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 1390
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| |||||||| | || || || | || |||||||||||||| |||||||| | ||||
Sbjct 1389 TGTTGACGATGTCGAAGCCAACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 1330
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| |||| |||| || || || ||||| ||||| || |||| ||| | |||
Sbjct 1329 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGCGCACCCATCTCCACCATGG 1270
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
|||| ||||||||||| ||| |||||||| ||||||| | || | ||||| |||||
Sbjct 1269 TCTCGCCGAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 1210
Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975
|| |||||||| ||||| || || || || || || || || ||||||||||
Sbjct 1209 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 1153
>seq84412
Length=14514
Score = 116 bits (128), Expect = 5e-21
Identities = 147/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
|||| || ||| |||| || | |||| || ||||| |||||||||||||| | ||||
Sbjct 6150 TCTTAACAATCTCAAAGCCAGCTGCTCCACCAAAGGTACTGGGTTTCCAGTACTCTGGGG 6091
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||||||| ||| | | || || || |||||||| ||||| || | ||| | || |
Sbjct 6090 AGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATAC 6031
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918
| || || || ||| | ||||| |||| || || | || || || | ||| |||||||
Sbjct 6030 TTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCGAGCAGTAAGCCTGGGTAAAACTCCA 5971
Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940
||| || |||||||| || ||
Sbjct 5970 GAGCATCAATGTCTCCATACAG 5949
>seq124118
Length=2984
Score = 87.8 bits (96), Expect = 3e-12
Identities = 111/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346
|||||||| || || | || ||||| || || | || || || || | |||| |
Sbjct 1176 TCACCTTTAACACCCATTGGTGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTG 1117
Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406
|| ||||| |||||||| |||||||||||||| ||| |||||| |||||| |
Sbjct 1116 TAGTAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTGTAGTCACTGTTGTAAGTT 1057
Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439
|| |||||||||||||| | ||||| |||||
Sbjct 1056 GGTGGGCTGTCAATCAAGTGTGATCTTGCTGAA 1024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 707120105301200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |