Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq44322 179 5e-40 seq84412 116 5e-21 seq124118 87.8 3e-12 >seq44322 Length=22867 Score = 179 bits (198), Expect = 5e-40 Identities = 218/297 (73%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| || ||||||||| | |||| || ||| | | || Sbjct 1449 GGAAGGCAGTGAAGGGACAGCCCTTGACGTTGTTGCAGATGAGCTTCTGCAGGGAGGCCG 1390 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||||||| | || || || | || |||||||||||||| |||||||| | |||| Sbjct 1389 TGTTGACGATGTCGAAGCCAACCTTGCCCCCGAAGGTGCTGGGCTTCCAGTACTCGGGGG 1330 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| |||| |||| || || || ||||| ||||| || |||| ||| | ||| Sbjct 1329 AGCAGATGGCGTTGCCCATCAGCCCCTTCAGGGAGAACGGCGCACCCATCTCCACCATGG 1270 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| ||||||||||| ||| |||||||| ||||||| | || | ||||| ||||| Sbjct 1269 TCTCGCCGAAGATGGCCCCGGGCCGGGGCTTCTCCACCAGCAGGCCTGGGTACAGCTCCA 1210 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || |||||||| ||||| || || || || || || || || |||||||||| Sbjct 1209 TGGCATCGATGTCCCCGTACAGCTCCTCCAGCTCCGCTGCCATCTCTTTTTCTCCTG 1153 >seq84412 Length=14514 Score = 116 bits (128), Expect = 5e-21 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || | |||| || ||||| |||||||||||||| | |||| Sbjct 6150 TCTTAACAATCTCAAAGCCAGCTGCTCCACCAAAGGTACTGGGTTTCCAGTACTCTGGGG 6091 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || |||||||| ||||| || | ||| | || | Sbjct 6090 AGCAGATGGGGTTTCCAAAAAGCCCCTTCAGGGAAAATGGAGCTCCGATCTCCACCATAC 6031 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || || ||| | ||||| |||| || || | || || || | ||| ||||||| Sbjct 6030 TTTCCCCAAAAATGCCATTGGGTTGGGGTTTCTCGAGCAGTAAGCCTGGGTAAAACTCCA 5971 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 5970 GAGCATCAATGTCTCCATACAG 5949 >seq124118 Length=2984 Score = 87.8 bits (96), Expect = 3e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || | || ||||| || || | || || || || | |||| | Sbjct 1176 TCACCTTTAACACCCATTGGTGTTGGGCAGTCAAGTCCTACTGGTGGAAGGCTTCTTGTG 1117 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 || ||||| |||||||| |||||||||||||| ||| |||||| |||||| | Sbjct 1116 TAGTAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTGTAGTCACTGTTGTAAGTT 1057 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || |||||||||||||| | ||||| ||||| Sbjct 1056 GGTGGGCTGTCAATCAAGTGTGATCTTGCTGAA 1024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707120105301200