Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq17341 129 7e-25 seq36611 114 2e-20 seq109629 89.7 6e-13 seq145217 82.4 9e-11 >seq17341 Length=11243 Score = 129 bits (142), Expect = 7e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| ||||| ||||| ||||| || || | ||| ||||| ||||| | ||| | Sbjct 768 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 827 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||||||||| | ||| || || || ||||||||||| ||||| ||||||||||||| Sbjct 828 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 887 Query 33446 CAATAAGTCTCTCTCC 33461 ||| | |||||| || Sbjct 888 CAACCACTCTCTCACC 903 >seq36611 Length=16847 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||||| || ||||| || ||||| |||||||| ||||||| || | || | Sbjct 2969 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 2910 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | |||||||| || || || || || |||||||||||||||||||| || || ||||||| Sbjct 2909 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACGGCTGCAAAGG 2850 Query 33446 C 33446 | Sbjct 2849 C 2849 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||| |||||||| | || |||||||| || || || || || ||||| || || ||| Sbjct 4182 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTTGTCTTGCCT 4123 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATT 33092 |||| || || ||||||||||| ||||| ||||| Sbjct 4122 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 4088 >seq109629 Length=3266 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274 ||||| ||||| ||||||||||| ||||| || || | || || || |||| || || Sbjct 957 CACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTG 1016 Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334 || || || ||||| ||||| || || || |||||| | | || || | |||||||| Sbjct 1017 CTCTTCCTTCCCTGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTCCAAGTGCCACGG 1076 Query 63335 TTCCAAGTATATGGCCATAACTCCAGG 63361 |||| ||| ||||| | | | ||||| Sbjct 1077 CTCCAGGTAGATGGCAAAAGCCCCAGG 1103 >seq145217 Length=433 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || ||||| || || || ||| || | || || || || ||||| | Sbjct 404 TCCAGCCGTAGAAGTGCATGCTGGTCAGCTTGCCGTAGTTGGGCTCGGCGATGTGGATGT 345 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| || || || || ||||||||||| || |||||||| ||||| || | ||| || | Sbjct 344 TCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCTGCCATCTTCAGGATGGTTT 285 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATA 62209 | || | || ||||| | ||| || || Sbjct 284 TCTGGGAGATCTCCCACACAGTCTTGTA 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621712168241800