Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq65683 116 3e-21
seq33192 113 4e-20
>seq65683
Length=849
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| |||| |||||||| || || | || || || || || |||||||| ||| |
Sbjct 89 CCACCTCGCAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 148
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || ||| || ||||||||||| ||| | || | | |||||| || ||||||
Sbjct 149 AGGGTACGACCGTCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCAGGAGGG 208
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| ||||| ||||| ||| || ||||| | || | || ||| ||| ||| |
Sbjct 209 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCCACC 268
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||| | ||| || || || || || || ||||| ||||||||
Sbjct 269 TCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 315
>seq33192
Length=1908
Score = 113 bits (124), Expect = 4e-20
Identities = 103/130 (79%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727
|||| | |||||||||| ||||| ||||| || |||||||| ||||| || ||||| |
Sbjct 1550 TGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGT 1609
Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787
| || ||||||||||| | |||||||||||||||||| || ||||||||| ||| |
Sbjct 1610 TGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGGTGCCAGTCTCAGTCTGGG 1669
Query 145788 TCTCCACGAT 145797
||| | |||
Sbjct 1670 ACTCGATGAT 1679
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471077005123200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |