Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq65683 116 3e-21
>seq65683
Length=849
Score = 116 bits (128), Expect = 3e-21
Identities = 166/232 (72%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| ||||| || | ||| |||| ||||| ||||| || || || ||||||||||||| |
Sbjct 89 CCACCTCGCAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAC 148
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| |||| |||| || ||||| || |||| |||| ||| || || |||
Sbjct 149 AGGGTACGACCGTCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCAGGAGGG 208
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||| || ||||| || || || ||| || | | | ||||||| |||||||
Sbjct 209 ATGCCTTCCTTGTCTTGGATCTTGGC--CTTGACATTTTCAATGGTGTCGCTGGGCTCCA 266
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938
|| | ||||||||| || || ||||| || ||||| || |||||||||||
Sbjct 267 CCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATTTT 318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404304965528950
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |