Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095
.1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq65683 109 5e-19
>seq65683
Length=849
Score = 109 bits (120), Expect = 5e-19
Identities = 165/235 (70%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052
|||| |||||| || || || ||||| |||| || || ||||||| |||| ||||||
Sbjct 321 GGAAAAATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAG 262
Query 25053 TCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112
| ||||| || || | ||| || ||| ||||| ||||| || || |||
Sbjct 261 CCCAGCGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCT 202
Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172
|| || ||| || | ||||| || ||||| || | ||||| | ||| || || |||
Sbjct 201 GATCAGCAGAGGCTGATTTTCGCTGGCAAGCAGCTGGAAGACGGTCGTACCCTGTCCGAC 142
Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
||||| || || ||||||||||| || || || ||||| | || |||| ||||
Sbjct 141 TACAACATCCAGAAAGAATCCACTCTGCACTTGGTGCTGCGCCTGCGAGGTGGAA 87
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 432490377653075
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |