Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq65683 188 1e-42 seq102638 98.7 2e-15 seq36611 84.2 4e-11 >seq65683 Length=849 Score = 188 bits (208), Expect = 1e-42 Identities = 182/231 (79%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || ||||||| |||||||| || ||||| ||||| |||||||| || |||| Sbjct 87 TTCCACCTCGCAGGCGCAGCACCAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCGG 146 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | || ||||| | |||||| || ||||| || || || || || || || | Sbjct 147 ACAGGGTACGACCGTCTTCCAGCTGCTTGCCAGCGAAAATCAGCCTCTGCTGATCAGGAG 206 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCT 68411 | ||||||||||||||||| ||||| |||||||| || |||||||| ||| | || Sbjct 207 GGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTC-GCTGGGCTCC 265 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || | ||||||||| || ||||| |||||||||||||| ||||||||| Sbjct 266 ACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATT 316 >seq102638 Length=1501 Score = 98.7 bits (108), Expect = 2e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| || ||||| || || ||| |||||||||||| | || || || Sbjct 1066 CCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCGATGGTGTCATTGGGCTCCACCTCA 1125 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||| |||||||||||||| ||||| |||||||| Sbjct 1126 AGGGTGATGGTTTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 1169 >seq36611 Length=16847 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 10740 ACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGG 10799 ||||||||| | |||||||| | ||| ||||||||||||||||||| | |||||| || Sbjct 444 ACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTGG 385 Query 10800 TACCGGATGGGGAA 10813 ||| |||||||||| Sbjct 384 TACTGGATGGGGAA 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 919795225990600