Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq108171 158 2e-33 seq33192 143 5e-29 seq109629 113 8e-20 seq17341 87.8 3e-12 seq145217 86.0 1e-11 seq36611 84.2 4e-11 >seq108171 Length=529 Score = 158 bits (174), Expect = 2e-33 Identities = 181/237 (76%), Gaps = 5/237 (2%) Strand=Plus/Minus Query 244318 CAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGT-CGCGCTGGGCCA 244376 || |||||||||||| || ||||| |||||| |||||| || | | | |||| ||| Sbjct 283 CACCCCCTTGCTGACCGGAGAGCCCTGGTAGGTGTCGTAGGGGCCCTGCTCCCTGG-CCA 225 Query 244377 GCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGT 244436 ||| |||||| | || ||||| ||||||| |||||||| ||||| || ||| | | Sbjct 224 GCTCACAGCTGGCCTCCAGGGCCCCGTAGTAAATGGTCTCAAAGATGTGCTGGTTGA-GC 166 Query 244437 CGC-GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCC 244495 || |||||| | ||| |||||||| | ||||| |||||| |||||||||| ||| Sbjct 165 AGCTGGGCCTGGGCGCTCTCGAAGGGGAACCTCATCAGGATGAAGGCGTCGGCCAGGCCC 106 Query 244496 TGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG-CTTCGGGCAC 244551 |||||||||||||||||||| | ||| ||| |||||||||| || || |||| || Sbjct 105 TGCACGCCGATGCCGATGGGGCGGTGCCGCCGGTTGGAGCGCTCGGCCTGCGGGGAC 49 >seq33192 Length=1908 Score = 143 bits (158), Expect = 5e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 244704 CCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGG 244763 ||||||||||| | ||||||||| || ||||||||||| ||||| ||||||||||||| Sbjct 1532 CCACCTCCTCCTTGCTGGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCACTTGATGG 1591 Query 244764 TGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCC 244823 ||||||||| ||| || ||| ||| |||||||| |||||||||||||||| |||| Sbjct 1592 TGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCCTTGTAGAGCATGTAGGGGG 1651 Query 244824 CCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCC 244883 || ||||| ||||| ||| || | || |||||| | | ||||| ||| || Sbjct 1652 TGCCAGTCTCAGTCTGGGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 1711 Query 244884 TGCGAGCCTTGCCCTCTGCCTCGTAGC 244910 |||| | ||||| |||||||| Sbjct 1712 TGCGCACGCGGCCCTGCCGCTCGTAGC 1738 >seq109629 Length=3266 Score = 113 bits (124), Expect = 8e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 245003 ACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGC 245062 || |||| ||||||||| || ||||||||||| || ||| |||||||||| | |||| Sbjct 958 ACTCTCTTCATGAAGAGATCAGGGATCCAGAGTGCAAAGAACAGGTCCCTGGCTCGCTGC 1017 Query 245063 TCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGC 245122 || ||| || ||||||||| |||| |||| || ||||||| ||| | |||||| ||| Sbjct 1018 TCTTCCTTCCCTGTGTTCTTCTTCAGGTCCAGGAACTCAAAGATGTCCAAGTGCCACGGC 1077 Query 245123 TCCATGTAGA 245132 |||| ||||| Sbjct 1078 TCCAGGTAGA 1087 >seq17341 Length=11243 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 903 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 844 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| ||| | || ||||| || ||||| Sbjct 843 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCTGGATTGACTTTCTCCAATGAACTT 784 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 783 ATTAGCAGAGATGAGG 768 >seq145217 Length=433 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933 || ||| ||||||||||||||||||| ||||| | | | ||||| ||||| | | || Sbjct 349 GATGTTCAGGGACTGGCTCTGGTCGATGAAGGCCCCTCTGTCTGCTGCCATCTTCAGGAT 290 Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCC 243993 | ||||| || ||||| || | |||||||||| |||| |||| ||||||| | | Sbjct 289 GGTTTTCTGGGAGATCTCCCACACAGTCTTGTAGAGCTGCTTCAGGTCATCGGGGATCTC 230 Query 243994 TTCGATGTTCTG 244005 ||||||||| Sbjct 229 AGGGATGTTCTG 218 >seq36611 Length=16847 Score = 84.2 bits (92), Expect = 4e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | ||||| || || |||||||| || ||| | || || || || || ||| Sbjct 2846 GTAGCCTTTGCAGCCGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCATCAATTTTTTGG 2905 Query 42768 CTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGAC 42827 || ||| | | | | ||||| |||||||| || || || ||||||||||| || || Sbjct 2906 CTGAAGAAAAGAGGATTAATGCCTGGACTCACTTTTTCTAATGAACTCATCAGTAGAGAT 2965 Query 42828 GAGG 42831 |||| Sbjct 2966 GAGG 2969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942466988514800