Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phylloscopus_20trochiloides_20viridanus_20[genbank_20GCA_5F001655095 .1_202016-06-02] 158,605 sequences; 1,003,330,590 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq65683 122 9e-23 >seq65683 Length=849 Score = 122 bits (134), Expect = 9e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| || |||||||| || | | ||| || ||||||| ||||||||||| Sbjct 119 GTGGATTCTTTCTGGATGTTGTAGTCGGACAGGGTACGACCGTCTTCCAGCTGCTTGCCA 178 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| |||| |||||| || ||||| || ||||| || ||||| || || ||| Sbjct 179 GCGAAAATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTG 238 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | || ||||| || | || | ||||||||| |||| || Sbjct 239 ACATTTTCAATGGTGTCGCTGGGCTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTC 298 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 299 TTGACGAAGATCTGCATTTT 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498654222956200